203 related articles for article (PubMed ID: 25916712)
1. ChIP-Seq to Analyze the Binding of Replication Proteins to Chromatin.
Ostrow AZ; Viggiani CJ; Aparicio JG; Aparicio OM
Methods Mol Biol; 2015; 1300():155-68. PubMed ID: 25916712
[TBL] [Abstract][Full Text] [Related]
2. ChIP-chip to analyze the binding of replication proteins to chromatin using oligonucleotide DNA microarrays.
Viggiani CJ; Aparicio JG; Aparicio OM
Methods Mol Biol; 2009; 521():255-78. PubMed ID: 19563111
[TBL] [Abstract][Full Text] [Related]
3. Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo.
Aparicio O; Geisberg JV; Struhl K
Curr Protoc Cell Biol; 2004 Sep; Chapter 17():Unit 17.7. PubMed ID: 18228445
[TBL] [Abstract][Full Text] [Related]
4. Broadly Applicable Control Approaches Improve Accuracy of ChIP-Seq Data.
Petrie MV; He Y; Gan Y; Ostrow AZ; Aparicio OM
Int J Mol Sci; 2023 May; 24(11):. PubMed ID: 37298223
[TBL] [Abstract][Full Text] [Related]
5. Profiling genome-wide histone modifications and variants by ChIP-chip on tiling microarrays in S. cerevisiae.
Bataille AR; Robert F
Methods Mol Biol; 2009; 543():267-79. PubMed ID: 19378172
[TBL] [Abstract][Full Text] [Related]
6. Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast.
Ezhkova E; Tansey WP
Methods Mol Biol; 2006; 313():225-44. PubMed ID: 16118437
[TBL] [Abstract][Full Text] [Related]
7. Software for rapid time dependent ChIP-sequencing analysis (TDCA).
Myschyshyn M; Farren-Dai M; Chuang TJ; Vocadlo D
BMC Bioinformatics; 2017 Nov; 18(1):521. PubMed ID: 29178831
[TBL] [Abstract][Full Text] [Related]
8. SNP-ChIP: a versatile and tag-free method to quantify changes in protein binding across the genome.
Vale-Silva LA; Markowitz TE; Hochwagen A
BMC Genomics; 2019 Jan; 20(1):54. PubMed ID: 30654749
[TBL] [Abstract][Full Text] [Related]
9. Biological chromodynamics: a general method for measuring protein occupancy across the genome by calibrating ChIP-seq.
Hu B; Petela N; Kurze A; Chan KL; Chapard C; Nasmyth K
Nucleic Acids Res; 2015 Nov; 43(20):e132. PubMed ID: 26130708
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of the Nucleolar Localization of the RENT Complex to Ribosomal DNA by Chromatin Immunoprecipitation Assays.
Huang J; Iglesias N; Moazed D
Methods Mol Biol; 2017; 1505():195-213. PubMed ID: 27826866
[TBL] [Abstract][Full Text] [Related]
11. Quantification of protein-DNA interactions by in vivo chromatin immunoprecipitation in yeast.
Pascual-Ahuir A; Proft M
Methods Mol Biol; 2012; 809():149-56. PubMed ID: 22113274
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide Mapping of Protein-DNA Interactions with ChEC-seq in Saccharomyces cerevisiae.
Grünberg S; Zentner GE
J Vis Exp; 2017 Jun; (124):. PubMed ID: 28605389
[TBL] [Abstract][Full Text] [Related]
13. Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo.
Aparicio O; Geisberg JV; Sekinger E; Yang A; Moqtaderi Z; Struhl K
Curr Protoc Mol Biol; 2005 Feb; Chapter 21():Unit 21.3. PubMed ID: 18265358
[TBL] [Abstract][Full Text] [Related]
14. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.
Lefrançois P; Zheng W; Snyder M
Methods Enzymol; 2010; 470():77-104. PubMed ID: 20946807
[TBL] [Abstract][Full Text] [Related]
15. How to Tackle Challenging ChIP-Seq, with Long-Range Cross-Linking, Using ATRX as an Example.
Truch J; Telenius J; Higgs DR; Gibbons RJ
Methods Mol Biol; 2018; 1832():105-130. PubMed ID: 30073524
[TBL] [Abstract][Full Text] [Related]
16. Mapping protein-DNA interactions using ChIP-sequencing.
Massie CE; Mills IG
Methods Mol Biol; 2012; 809():157-73. PubMed ID: 22113275
[TBL] [Abstract][Full Text] [Related]
17. Widespread misinterpretable ChIP-seq bias in yeast.
Park D; Lee Y; Bhupindersingh G; Iyer VR
PLoS One; 2013; 8(12):e83506. PubMed ID: 24349523
[TBL] [Abstract][Full Text] [Related]
18. Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.
Lefrançois P; Euskirchen GM; Auerbach RK; Rozowsky J; Gibson T; Yellman CM; Gerstein M; Snyder M
BMC Genomics; 2009 Jan; 10():37. PubMed ID: 19159457
[TBL] [Abstract][Full Text] [Related]
19. Analysis of Protein-DNA Interaction by Chromatin Immunoprecipitation and DNA Tiling Microarray (ChIP-on-chip).
Gao H; Zhao C
Methods Mol Biol; 2018; 1689():43-51. PubMed ID: 29027163
[TBL] [Abstract][Full Text] [Related]
20. Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.
Jain D; Baldi S; Zabel A; Straub T; Becker PB
Nucleic Acids Res; 2015 Aug; 43(14):6959-68. PubMed ID: 26117547
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]