These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

423 related articles for article (PubMed ID: 25928663)

  • 1. Elviz - exploration of metagenome assemblies with an interactive visualization tool.
    Cantor M; Nordberg H; Smirnova T; Hess M; Tringe S; Dubchak I
    BMC Bioinformatics; 2015 Apr; 16(1):130. PubMed ID: 25928663
    [TBL] [Abstract][Full Text] [Related]  

  • 2. IMG/M: integrated genome and metagenome comparative data analysis system.
    Chen IA; Markowitz VM; Chu K; Palaniappan K; Szeto E; Pillay M; Ratner A; Huang J; Andersen E; Huntemann M; Varghese N; Hadjithomas M; Tennessen K; Nielsen T; Ivanova NN; Kyrpides NC
    Nucleic Acids Res; 2017 Jan; 45(D1):D507-D516. PubMed ID: 27738135
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DOE JGI Metagenome Workflow.
    Clum A; Huntemann M; Bushnell B; Foster B; Foster B; Roux S; Hajek PP; Varghese N; Mukherjee S; Reddy TBK; Daum C; Yoshinaga Y; O'Malley R; Seshadri R; Kyrpides NC; Eloe-Fadrosh EA; Chen IA; Copeland A; Ivanova NN
    mSystems; 2021 May; 6(3):. PubMed ID: 34006627
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
    Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
    BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
    [TBL] [Abstract][Full Text] [Related]  

  • 5. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 6. drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.
    Lin HH; Liao YC
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369462
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.
    Silva GGZ; Lopes FAC; Edwards RA
    Methods Mol Biol; 2017; 1611():35-44. PubMed ID: 28451970
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
    Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
    BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
    Broeksema B; Calusinska M; McGee F; Winter K; Bongiovanni F; Goux X; Wilmes P; Delfosse P; Ghoniem M
    BMC Bioinformatics; 2017 May; 18(1):233. PubMed ID: 28464793
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluating techniques for metagenome annotation using simulated sequence data.
    Randle-Boggis RJ; Helgason T; Sapp M; Ashton PD
    FEMS Microbiol Ecol; 2016 Jul; 92(7):. PubMed ID: 27162180
    [TBL] [Abstract][Full Text] [Related]  

  • 12. IMG/M 4 version of the integrated metagenome comparative analysis system.
    Markowitz VM; Chen IM; Chu K; Szeto E; Palaniappan K; Pillay M; Ratner A; Huang J; Pagani I; Tringe S; Huntemann M; Billis K; Varghese N; Tennessen K; Mavromatis K; Pati A; Ivanova NN; Kyrpides NC
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D568-73. PubMed ID: 24136997
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Metagenome assembly through clustering of next-generation sequencing data using protein sequences.
    Sim M; Kim J
    J Microbiol Methods; 2015 Feb; 109():180-7. PubMed ID: 25572018
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.
    Lugli GA; Milani C; Mancabelli L; van Sinderen D; Ventura M
    FEMS Microbiol Lett; 2016 Apr; 363(7):. PubMed ID: 26936607
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes.
    Corrêa FB; Saraiva JP; Stadler PF; da Rocha UN
    Nucleic Acids Res; 2020 Jan; 48(D1):D626-D632. PubMed ID: 31728526
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identifying biologically relevant differences between metagenomic communities.
    Parks DH; Beiko RG
    Bioinformatics; 2010 Mar; 26(6):715-21. PubMed ID: 20130030
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
    Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
    J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    Zou B; Li J; Zhou Q; Quan ZX
    PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs.
    Scholz M; Lo CC; Chain PS
    Sci Rep; 2014 Oct; 4():6480. PubMed ID: 25270300
    [TBL] [Abstract][Full Text] [Related]  

  • 20. IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.
    Chen IA; Chu K; Palaniappan K; Pillay M; Ratner A; Huang J; Huntemann M; Varghese N; White JR; Seshadri R; Smirnova T; Kirton E; Jungbluth SP; Woyke T; Eloe-Fadrosh EA; Ivanova NN; Kyrpides NC
    Nucleic Acids Res; 2019 Jan; 47(D1):D666-D677. PubMed ID: 30289528
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.