296 related articles for article (PubMed ID: 25943472)
21. glyXalign: high-throughput migration time alignment preprocessing of electrophoretic data retrieved via multiplexed capillary gel electrophoresis with laser-induced fluorescence detection-based glycoprofiling.
Behne A; Muth T; Borowiak M; Reichl U; Rapp E
Electrophoresis; 2013 Aug; 34(16):2311-5. PubMed ID: 23637070
[TBL] [Abstract][Full Text] [Related]
22. An RNA Mapping DataBase for curating RNA structure mapping experiments.
Cordero P; Lucks JB; Das R
Bioinformatics; 2012 Nov; 28(22):3006-8. PubMed ID: 22976082
[TBL] [Abstract][Full Text] [Related]
23. RILogo: visualizing RNA-RNA interactions.
Menzel P; Seemann SE; Gorodkin J
Bioinformatics; 2012 Oct; 28(19):2523-6. PubMed ID: 22826541
[TBL] [Abstract][Full Text] [Related]
24. QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis.
Karabiber F; McGinnis JL; Favorov OV; Weeks KM
RNA; 2013 Jan; 19(1):63-73. PubMed ID: 23188808
[TBL] [Abstract][Full Text] [Related]
25. iFoldRNA v2: folding RNA with constraints.
Krokhotin A; Houlihan K; Dokholyan NV
Bioinformatics; 2015 Sep; 31(17):2891-3. PubMed ID: 25910700
[TBL] [Abstract][Full Text] [Related]
26. Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns.
Meyer F; Kurtz S; Beckstette M
BMC Bioinformatics; 2013 Jul; 14():226. PubMed ID: 23865810
[TBL] [Abstract][Full Text] [Related]
27. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
Mitra S; Shcherbakova IV; Altman RB; Brenowitz M; Laederach A
Nucleic Acids Res; 2008 Jun; 36(11):e63. PubMed ID: 18477638
[TBL] [Abstract][Full Text] [Related]
28. Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.
Hu X; Wong TK; Lu ZJ; Chan TF; Lau TC; Yiu SM; Yip KY
Bioinformatics; 2014 Apr; 30(8):1049-1055. PubMed ID: 24376038
[TBL] [Abstract][Full Text] [Related]
29. RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data.
Incarnato D; Neri F; Anselmi F; Oliviero S
Bioinformatics; 2016 Feb; 32(3):459-61. PubMed ID: 26487736
[TBL] [Abstract][Full Text] [Related]
30. A new approach to bias correction in RNA-Seq.
Jones DC; Ruzzo WL; Peng X; Katze MG
Bioinformatics; 2012 Apr; 28(7):921-8. PubMed ID: 22285831
[TBL] [Abstract][Full Text] [Related]
31. A partition function algorithm for interacting nucleic acid strands.
Chitsaz H; Salari R; Sahinalp SC; Backofen R
Bioinformatics; 2009 Jun; 25(12):i365-73. PubMed ID: 19478011
[TBL] [Abstract][Full Text] [Related]
32. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
Shi Y; Chinnaiyan AM; Jiang H
Bioinformatics; 2015 Jul; 31(13):2222-4. PubMed ID: 25717189
[TBL] [Abstract][Full Text] [Related]
33. Predicting pseudoknotted structures across two RNA sequences.
Sperschneider J; Datta A; Wise MJ
Bioinformatics; 2012 Dec; 28(23):3058-65. PubMed ID: 23044552
[TBL] [Abstract][Full Text] [Related]
34. A local multiple alignment method for detection of non-coding RNA sequences.
Tabei Y; Asai K
Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
[TBL] [Abstract][Full Text] [Related]
35. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
36. RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
Yan Y; Huang SY
Bioinformatics; 2018 Feb; 34(3):453-458. PubMed ID: 29028888
[TBL] [Abstract][Full Text] [Related]
37. CPSS: a computational platform for the analysis of small RNA deep sequencing data.
Zhang Y; Xu B; Yang Y; Ban R; Zhang H; Jiang X; Cooke HJ; Xue Y; Shi Q
Bioinformatics; 2012 Jul; 28(14):1925-7. PubMed ID: 22576177
[TBL] [Abstract][Full Text] [Related]
38. Updating RNA-Seq analyses after re-annotation.
Roberts A; Schaeffer L; Pachter L
Bioinformatics; 2013 Jul; 29(13):1631-7. PubMed ID: 23677943
[TBL] [Abstract][Full Text] [Related]
39. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
[TBL] [Abstract][Full Text] [Related]
40. Information transduction capacity reduces the uncertainties in annotation-free isoform discovery and quantification.
Deng Y; Bao F; Yang Y; Ji X; Du M; Zhang Z; Wang M; Dai Q
Nucleic Acids Res; 2017 Sep; 45(15):e143. PubMed ID: 28911101
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]