299 related articles for article (PubMed ID: 25943472)
41. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
[TBL] [Abstract][Full Text] [Related]
42. Information transduction capacity reduces the uncertainties in annotation-free isoform discovery and quantification.
Deng Y; Bao F; Yang Y; Ji X; Du M; Zhang Z; Wang M; Dai Q
Nucleic Acids Res; 2017 Sep; 45(15):e143. PubMed ID: 28911101
[TBL] [Abstract][Full Text] [Related]
43. SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments.
Das R; Laederach A; Pearlman SM; Herschlag D; Altman RB
RNA; 2005 Mar; 11(3):344-54. PubMed ID: 15701734
[TBL] [Abstract][Full Text] [Related]
44. A memory efficient method for structure-based RNA multiple alignment.
DeBlasio D; Bruand J; Zhang S
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
[TBL] [Abstract][Full Text] [Related]
45. Detecting circular RNAs: bioinformatic and experimental challenges.
Szabo L; Salzman J
Nat Rev Genet; 2016 Oct; 17(11):679-692. PubMed ID: 27739534
[TBL] [Abstract][Full Text] [Related]
46. CircMarker: a fast and accurate algorithm for circular RNA detection.
Li X; Chu C; Pei J; Măndoiu I; Wu Y
BMC Genomics; 2018 Aug; 19(Suppl 6):572. PubMed ID: 30367583
[TBL] [Abstract][Full Text] [Related]
47. RiboCAT: a new capillary electrophoresis data analysis tool for nucleic acid probing.
Cantara WA; Hatterschide J; Wu W; Musier-Forsyth K
RNA; 2017 Feb; 23(2):240-249. PubMed ID: 27821510
[TBL] [Abstract][Full Text] [Related]
48. miRseqViewer: multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data.
Jang I; Chang H; Jun Y; Park S; Yang JO; Lee B; Kim W; Kim VN; Lee S
Bioinformatics; 2015 Feb; 31(4):596-8. PubMed ID: 25322835
[TBL] [Abstract][Full Text] [Related]
49. BPP: a sequence-based algorithm for branch point prediction.
Zhang Q; Fan X; Wang Y; Sun MA; Shao J; Guo D
Bioinformatics; 2017 Oct; 33(20):3166-3172. PubMed ID: 28633445
[TBL] [Abstract][Full Text] [Related]
50. RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
Srivastava A; Sarkar H; Gupta N; Patro R
Bioinformatics; 2016 Jun; 32(12):i192-i200. PubMed ID: 27307617
[TBL] [Abstract][Full Text] [Related]
51. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
Bose T; Haque MM; Reddy C; Mande SS
PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
[TBL] [Abstract][Full Text] [Related]
52. An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.
Xia J; Peng Z; Qi D; Mu H; Yang J
Bioinformatics; 2017 Mar; 33(6):863-870. PubMed ID: 28039166
[TBL] [Abstract][Full Text] [Related]
53. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
[TBL] [Abstract][Full Text] [Related]
54. RNA structural alignments, part I: Sankoff-based approaches for structural alignments.
Havgaard JH; Gorodkin J
Methods Mol Biol; 2014; 1097():275-90. PubMed ID: 24639164
[TBL] [Abstract][Full Text] [Related]
55. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
56. Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.
Kemena C; Bussotti G; Capriotti E; Marti-Renom MA; Notredame C
Bioinformatics; 2013 May; 29(9):1112-9. PubMed ID: 23449094
[TBL] [Abstract][Full Text] [Related]
57. The art of editing RNA structural alignments.
Andersen ES
Methods Mol Biol; 2014; 1097():379-94. PubMed ID: 24639168
[TBL] [Abstract][Full Text] [Related]
58. Accurate prediction of RNA nucleotide interactions with backbone k-tree model.
Ding L; Xue X; LaMarca S; Mohebbi M; Samad A; Malmberg RL; Cai L
Bioinformatics; 2015 Aug; 31(16):2660-7. PubMed ID: 25886978
[TBL] [Abstract][Full Text] [Related]
59. GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering.
Miladi M; Sokhoyan E; Houwaart T; Heyne S; Costa F; Grüning B; Backofen R
Gigascience; 2019 Dec; 8(12):. PubMed ID: 31808801
[TBL] [Abstract][Full Text] [Related]
60. Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.
Althammer S; González-Vallinas J; Ballaré C; Beato M; Eyras E
Bioinformatics; 2011 Dec; 27(24):3333-40. PubMed ID: 21994224
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]