208 related articles for article (PubMed ID: 25943543)
1. TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks.
Hamed M; Spaniol C; Nazarieh M; Helms V
Nucleic Acids Res; 2015 Jul; 43(W1):W283-8. PubMed ID: 25943543
[TBL] [Abstract][Full Text] [Related]
2. cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.
Xu H; Yu H; Tu K; Shi Q; Wei C; Li YY; Li YX
BMC Syst Biol; 2013; 7 Suppl 2(Suppl 2):S7. PubMed ID: 24565134
[TBL] [Abstract][Full Text] [Related]
3. TFmiR2: constructing and analyzing disease-, tissue- and process-specific transcription factor and microRNA co-regulatory networks.
Nazarieh M; Hamed M; Spaniol C; Will T; Helms V
Bioinformatics; 2020 Apr; 36(7):2300-2302. PubMed ID: 31746988
[TBL] [Abstract][Full Text] [Related]
4. Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.
Jayavelu ND; Bar N
BMC Genomics; 2015 Dec; 16():1077. PubMed ID: 26763900
[TBL] [Abstract][Full Text] [Related]
5. Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.
Sengupta D; Bandyopadhyay S
Mol Biosyst; 2011 Jun; 7(6):1966-73. PubMed ID: 21483898
[TBL] [Abstract][Full Text] [Related]
6. PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data.
Guan D; Shao J; Zhao Z; Wang P; Qin J; Deng Y; Boheler KR; Wang J; Yan B
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W130-6. PubMed ID: 24875471
[TBL] [Abstract][Full Text] [Related]
7. mirConnX: condition-specific mRNA-microRNA network integrator.
Huang GT; Athanassiou C; Benos PV
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W416-23. PubMed ID: 21558324
[TBL] [Abstract][Full Text] [Related]
8. EpiRegNet: constructing epigenetic regulatory network from high throughput gene expression data for humans.
Wang LY; Wang P; Li MJ; Qin J; Wang X; Zhang MQ; Wang J
Epigenetics; 2011 Dec; 6(12):1505-12. PubMed ID: 22139581
[TBL] [Abstract][Full Text] [Related]
9. Inferring the regulatory network behind a gene expression experiment.
Bleda M; Medina I; Alonso R; De Maria A; Salavert F; Dopazo J
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W168-72. PubMed ID: 22693210
[TBL] [Abstract][Full Text] [Related]
10. MiRTargetLink--miRNAs, Genes and Interaction Networks.
Hamberg M; Backes C; Fehlmann T; Hart M; Meder B; Meese E; Keller A
Int J Mol Sci; 2016 Apr; 17(4):564. PubMed ID: 27089332
[TBL] [Abstract][Full Text] [Related]
11. Topological patterns in microRNA-gene regulatory network: studies in colorectal and breast cancer.
Sengupta D; Bandyopadhyay S
Mol Biosyst; 2013 Jun; 9(6):1360-71. PubMed ID: 23475160
[TBL] [Abstract][Full Text] [Related]
12. Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks.
Hsieh WT; Tzeng KR; Ciou JS; Tsai JJ; Kurubanjerdjit N; Huang CH; Ng KL
BMC Syst Biol; 2015; 9 Suppl 1(Suppl 1):S5. PubMed ID: 25707690
[TBL] [Abstract][Full Text] [Related]
13. CRSD: a comprehensive web server for composite regulatory signature discovery.
Liu CC; Lin CC; Chen WS; Chen HY; Chang PC; Chen JJ; Yang PC
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W571-7. PubMed ID: 16845073
[TBL] [Abstract][Full Text] [Related]
14. MISIM v2.0: a web server for inferring microRNA functional similarity based on microRNA-disease associations.
Li J; Zhang S; Wan Y; Zhao Y; Shi J; Zhou Y; Cui Q
Nucleic Acids Res; 2019 Jul; 47(W1):W536-W541. PubMed ID: 31069374
[TBL] [Abstract][Full Text] [Related]
15. TAM 2.0: tool for MicroRNA set analysis.
Li J; Han X; Wan Y; Zhang S; Zhao Y; Fan R; Cui Q; Zhou Y
Nucleic Acids Res; 2018 Jul; 46(W1):W180-W185. PubMed ID: 29878154
[TBL] [Abstract][Full Text] [Related]
16. Network-based ranking methods for prediction of novel disease associated microRNAs.
Le DH
Comput Biol Chem; 2015 Oct; 58():139-48. PubMed ID: 26231308
[TBL] [Abstract][Full Text] [Related]
17. MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).
Bisognin A; Sales G; Coppe A; Bortoluzzi S; Romualdi C
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W13-21. PubMed ID: 22618880
[TBL] [Abstract][Full Text] [Related]
18. CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.
Friard O; Re A; Taverna D; De Bortoli M; Corá D
BMC Bioinformatics; 2010 Aug; 11():435. PubMed ID: 20731828
[TBL] [Abstract][Full Text] [Related]
19. Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.
Hsu SD; Huang HY; Chou CH; Sun YM; Hsu MT; Tsou AP
BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S12. PubMed ID: 25707768
[TBL] [Abstract][Full Text] [Related]
20. Indirect role of microRNAs and transcription factors in the regulation of important cancer genes: A network biology approach.
Ahmadi M; Jafari R; Marashi SA; Farazmand A
Cell Mol Biol (Noisy-le-grand); 2015 Oct; 61(6):100-7. PubMed ID: 26518901
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]