240 related articles for article (PubMed ID: 25956793)
1. What does it take to evolve an enhancer? A simulation-based study of factors influencing the emergence of combinatorial regulation.
Duque T; Sinha S
Genome Biol Evol; 2015 May; 7(6):1415-31. PubMed ID: 25956793
[TBL] [Abstract][Full Text] [Related]
2. Evolutionary origins of transcription factor binding site clusters.
He X; Duque TS; Sinha S
Mol Biol Evol; 2012 Mar; 29(3):1059-70. PubMed ID: 22075113
[TBL] [Abstract][Full Text] [Related]
3. The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster.
Davis GK; Srinivasan DG; Wittkopp PJ; Stern DL
Dev Biol; 2007 Aug; 308(2):621-31. PubMed ID: 17640629
[TBL] [Abstract][Full Text] [Related]
4. Simulations of enhancer evolution provide mechanistic insights into gene regulation.
Duque T; Samee MA; Kazemian M; Pham HN; Brodsky MH; Sinha S
Mol Biol Evol; 2014 Jan; 31(1):184-200. PubMed ID: 24097306
[TBL] [Abstract][Full Text] [Related]
5. The Functionality and Evolution of Eukaryotic Transcriptional Enhancers.
Buffry AD; Mendes CC; McGregor AP
Adv Genet; 2016; 96():143-206. PubMed ID: 27968730
[TBL] [Abstract][Full Text] [Related]
6. Functional regulatory evolution outside of the minimal
Crocker J; Stern DL
Development; 2017 Sep; 144(17):3095-3101. PubMed ID: 28760812
[TBL] [Abstract][Full Text] [Related]
7. Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity.
Khoueiry P; Girardot C; Ciglar L; Peng PC; Gustafson EH; Sinha S; Furlong EE
Elife; 2017 Aug; 6():. PubMed ID: 28792889
[TBL] [Abstract][Full Text] [Related]
8. Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
Glinsky GV
Chromosome Res; 2018 Mar; 26(1-2):61-84. PubMed ID: 29335803
[TBL] [Abstract][Full Text] [Related]
9. Disentangling Sources of Selection on Exonic Transcriptional Enhancers.
Agoglia RM; Fraser HB
Mol Biol Evol; 2016 Feb; 33(2):585-90. PubMed ID: 26500252
[TBL] [Abstract][Full Text] [Related]
10. Gain of cis-regulatory activities underlies novel domains of wingless gene expression in Drosophila.
Koshikawa S; Giorgianni MW; Vaccaro K; Kassner VA; Yoder JH; Werner T; Carroll SB
Proc Natl Acad Sci U S A; 2015 Jun; 112(24):7524-9. PubMed ID: 26034272
[TBL] [Abstract][Full Text] [Related]
11. Quantitative modeling of a gene's expression from its intergenic sequence.
Samee MA; Sinha S
PLoS Comput Biol; 2014 Mar; 10(3):e1003467. PubMed ID: 24604095
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function.
Preger-Ben Noon E; Sabarís G; Ortiz DM; Sager J; Liebowitz A; Stern DL; Frankel N
Cell Rep; 2018 Mar; 22(11):3021-3031. PubMed ID: 29539428
[TBL] [Abstract][Full Text] [Related]
13. Drosophila poised enhancers are generated during tissue patterning with the help of repression.
Koenecke N; Johnston J; He Q; Meier S; Zeitlinger J
Genome Res; 2017 Jan; 27(1):64-74. PubMed ID: 27979994
[TBL] [Abstract][Full Text] [Related]
14. The Evolution of Bony Vertebrate Enhancers at Odds with Their Coding Sequence Landscape.
Yousaf A; Sohail Raza M; Ali Abbasi A
Genome Biol Evol; 2015 Aug; 7(8):2333-43. PubMed ID: 26253316
[TBL] [Abstract][Full Text] [Related]
15. Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences.
Rebeiz M; Jikomes N; Kassner VA; Carroll SB
Proc Natl Acad Sci U S A; 2011 Jun; 108(25):10036-43. PubMed ID: 21593416
[TBL] [Abstract][Full Text] [Related]
16. LTR retrotransposons and the evolution of eukaryotic enhancers.
McDonald JF; Matyunina LV; Wilson S; Jordan IK; Bowen NJ; Miller WJ
Genetica; 1997; 100(1-3):3-13. PubMed ID: 9440254
[TBL] [Abstract][Full Text] [Related]
17. Diverse Cis-Regulatory Mechanisms Contribute to Expression Evolution of Tandem Gene Duplicates.
Baudouin-Gonzalez L; Santos MA; Tempesta C; Sucena É; Roch F; Tanaka K
Mol Biol Evol; 2017 Dec; 34(12):3132-3147. PubMed ID: 28961967
[TBL] [Abstract][Full Text] [Related]
18. Modeling the Evolutionary Architectures of Transcribed Human Enhancer Sequences Reveals Distinct Origins, Functions, and Associations with Human Trait Variation.
Fong SL; Capra JA
Mol Biol Evol; 2021 Aug; 38(9):3681-3696. PubMed ID: 33973014
[TBL] [Abstract][Full Text] [Related]
19. Expected rates and modes of evolution of enhancer sequences.
MacArthur S; Brookfield JF
Mol Biol Evol; 2004 Jun; 21(6):1064-73. PubMed ID: 15014138
[TBL] [Abstract][Full Text] [Related]
20. Functional tests of enhancer conservation between distantly related species.
Ruvinsky I; Ruvkun G
Development; 2003 Nov; 130(21):5133-42. PubMed ID: 12944426
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]