These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 25967048)

  • 21. Computational approaches for the discovery of splicing regulatory RNA structures.
    Andrews RJ; Moss WN
    Biochim Biophys Acta Gene Regul Mech; 2019; 1862(11-12):194380. PubMed ID: 31048028
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Simultaneous prediction of RNA secondary structure and helix coaxial stacking.
    Shareghi P; Wang Y; Malmberg R; Cai L
    BMC Genomics; 2012 Jun; 13 Suppl 3(Suppl 3):S7. PubMed ID: 22759616
    [TBL] [Abstract][Full Text] [Related]  

  • 23. F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.
    Jain S; Schlick T
    J Mol Biol; 2017 Nov; 429(23):3587-3605. PubMed ID: 28988954
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Predicting loop-helix tertiary structural contacts in RNA pseudoknots.
    Cao S; Giedroc DP; Chen SJ
    RNA; 2010 Mar; 16(3):538-52. PubMed ID: 20100813
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Computational Methods for Modeling Aptamers and Designing Riboswitches.
    Gong S; Wang Y; Wang Z; Zhang W
    Int J Mol Sci; 2017 Nov; 18(11):. PubMed ID: 29149090
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Physics-based RNA structure prediction.
    Xu X; Chen SJ
    Biophys Rep; 2015; 1():2-13. PubMed ID: 26942214
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce.
    Zhang B; Yehdego DT; Johnson KL; Leung MY; Taufer M
    BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S3. PubMed ID: 24564983
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Accurate prediction of RNA nucleotide interactions with backbone k-tree model.
    Ding L; Xue X; LaMarca S; Mohebbi M; Samad A; Malmberg RL; Cai L
    Bioinformatics; 2015 Aug; 31(16):2660-7. PubMed ID: 25886978
    [TBL] [Abstract][Full Text] [Related]  

  • 29. RNA-As-Graphs Motif Atlas-Dual Graph Library of RNA Modules and Viral Frameshifting-Element Applications.
    Zhu Q; Petingi L; Schlick T
    Int J Mol Sci; 2022 Aug; 23(16):. PubMed ID: 36012512
    [TBL] [Abstract][Full Text] [Related]  

  • 30. 3dDNA: A Computational Method of Building DNA 3D Structures.
    Zhang Y; Xiong Y; Xiao Y
    Molecules; 2022 Sep; 27(18):. PubMed ID: 36144680
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Modeling and Predicting RNA Three-Dimensional Structures.
    Reinharz V; Sarrazin-Gendron R; Waldispühl J
    Methods Mol Biol; 2021; 2284():17-42. PubMed ID: 33835435
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Secondary structural entropy in RNA switch (Riboswitch) identification.
    Manzourolajdad A; Arnold J
    BMC Bioinformatics; 2015 Apr; 16():133. PubMed ID: 25928324
    [TBL] [Abstract][Full Text] [Related]  

  • 33. An algorithmic game-theory approach for coarse-grain prediction of RNA 3D structure.
    Lamiable A; Quessette F; Vial S; Barth D; Denise A
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(1):193-9. PubMed ID: 23702555
    [TBL] [Abstract][Full Text] [Related]  

  • 34. RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
    Yao J; Reinharz V; Major F; Waldispühl J
    Nucleic Acids Res; 2017 Jul; 45(W1):W440-W444. PubMed ID: 28525607
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
    Petrov AI; Zirbel CL; Leontis NB
    RNA; 2013 Oct; 19(10):1327-40. PubMed ID: 23970545
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
    Reinharz V; Major F; Waldispühl J
    Bioinformatics; 2012 Jun; 28(12):i207-14. PubMed ID: 22689763
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.
    Boniecki MJ; Lach G; Dawson WK; Tomala K; Lukasz P; Soltysinski T; Rother KM; Bujnicki JM
    Nucleic Acids Res; 2016 Apr; 44(7):e63. PubMed ID: 26687716
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A pipeline for computational design of novel RNA-like topologies.
    Jain S; Laederach A; Ramos SBV; Schlick T
    Nucleic Acids Res; 2018 Aug; 46(14):7040-7051. PubMed ID: 30137633
    [TBL] [Abstract][Full Text] [Related]  

  • 39. RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
    Miao Z; Adamiak RW; Blanchet MF; Boniecki M; Bujnicki JM; Chen SJ; Cheng C; Chojnowski G; Chou FC; Cordero P; Cruz JA; Ferré-D'Amaré AR; Das R; Ding F; Dokholyan NV; Dunin-Horkawicz S; Kladwang W; Krokhotin A; Lach G; Magnus M; Major F; Mann TH; Masquida B; Matelska D; Meyer M; Peselis A; Popenda M; Purzycka KJ; Serganov A; Stasiewicz J; Szachniuk M; Tandon A; Tian S; Wang J; Xiao Y; Xu X; Zhang J; Zhao P; Zok T; Westhof E
    RNA; 2015 Jun; 21(6):1066-84. PubMed ID: 25883046
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Using 3dRNA for RNA 3-D Structure Prediction and Evaluation.
    Wang J; Xiao Y
    Curr Protoc Bioinformatics; 2017 May; 57():5.9.1-5.9.12. PubMed ID: 28463400
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.