417 related articles for article (PubMed ID: 25971742)
1. GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.
Gundersen GW; Jones MR; Rouillard AD; Kou Y; Monteiro CD; Feldmann AS; Hu KS; Ma'ayan A
Bioinformatics; 2015 Sep; 31(18):3060-2. PubMed ID: 25971742
[TBL] [Abstract][Full Text] [Related]
2. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Kuleshov MV; Jones MR; Rouillard AD; Fernandez NF; Duan Q; Wang Z; Koplev S; Jenkins SL; Jagodnik KM; Lachmann A; McDermott MG; Monteiro CD; Gundersen GW; Ma'ayan A
Nucleic Acids Res; 2016 Jul; 44(W1):W90-7. PubMed ID: 27141961
[TBL] [Abstract][Full Text] [Related]
3. THEME: a web tool for loop-design microarray data analysis.
Chen CR; Shu WY; Tsai ML; Cheng WC; Hsu IC
Comput Biol Med; 2012 Feb; 42(2):228-34. PubMed ID: 22188791
[TBL] [Abstract][Full Text] [Related]
4. shinyGEO: a web-based application for analyzing gene expression omnibus datasets.
Dumas J; Gargano MA; Dancik GM
Bioinformatics; 2016 Dec; 32(23):3679-3681. PubMed ID: 27503226
[TBL] [Abstract][Full Text] [Related]
5. The Gene Expression Omnibus Database.
Clough E; Barrett T
Methods Mol Biol; 2016; 1418():93-110. PubMed ID: 27008011
[TBL] [Abstract][Full Text] [Related]
6. ArrayQuest: a web resource for the analysis of DNA microarray data.
Argraves GL; Jani S; Barth JL; Argraves WS
BMC Bioinformatics; 2005 Dec; 6():287. PubMed ID: 16321157
[TBL] [Abstract][Full Text] [Related]
7. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.
Chen EY; Tan CM; Kou Y; Duan Q; Wang Z; Meirelles GV; Clark NR; Ma'ayan A
BMC Bioinformatics; 2013 Apr; 14():128. PubMed ID: 23586463
[TBL] [Abstract][Full Text] [Related]
8. BART: bioinformatics array research tool.
Amaral ML; Erikson GA; Shokhirev MN
BMC Bioinformatics; 2018 Aug; 19(1):296. PubMed ID: 30089462
[TBL] [Abstract][Full Text] [Related]
9. NCBI GEO: mining tens of millions of expression profiles--database and tools update.
Barrett T; Troup DB; Wilhite SE; Ledoux P; Rudnev D; Evangelista C; Kim IF; Soboleva A; Tomashevsky M; Edgar R
Nucleic Acids Res; 2007 Jan; 35(Database issue):D760-5. PubMed ID: 17099226
[TBL] [Abstract][Full Text] [Related]
10. Simple Analysis of Deposited Gene Expression Datasets for the Non-Bioinformatician: How to Use GEO for Fibrosis Research.
Guo Y; Townsend R; Tsoi LC
Methods Mol Biol; 2017; 1627():511-525. PubMed ID: 28836221
[TBL] [Abstract][Full Text] [Related]
11. Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization.
Zhang M; Zhang Y; Liu L; Yu L; Tsang S; Tan J; Yao W; Kang MS; An Y; Fan X
BMC Bioinformatics; 2010 Aug; 11():433. PubMed ID: 20727159
[TBL] [Abstract][Full Text] [Related]
12. Strategies to explore functional genomics data sets in NCBI's GEO database.
Wilhite SE; Barrett T
Methods Mol Biol; 2012; 802():41-53. PubMed ID: 22130872
[TBL] [Abstract][Full Text] [Related]
13. Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.
Guzzi PH; Cannataro M
Comput Methods Programs Biomed; 2013 Aug; 111(2):402-9. PubMed ID: 23731720
[TBL] [Abstract][Full Text] [Related]
14. The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
Bare JC; Shannon PT; Schmid AK; Baliga NS
BMC Bioinformatics; 2007 Nov; 8():456. PubMed ID: 18021453
[TBL] [Abstract][Full Text] [Related]
15. GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.
Feng C; Araki M; Kunimoto R; Tamon A; Makiguchi H; Niijima S; Tsujimoto G; Okuno Y
BMC Genomics; 2009 Sep; 10():411. PubMed ID: 19728865
[TBL] [Abstract][Full Text] [Related]
16. EDGE(3): a web-based solution for management and analysis of Agilent two color microarray experiments.
Vollrath AL; Smith AA; Craven M; Bradfield CA
BMC Bioinformatics; 2009 Sep; 10():280. PubMed ID: 19732451
[TBL] [Abstract][Full Text] [Related]
17. mu-CS: an extension of the TM4 platform to manage Affymetrix binary data.
Guzzi PH; Cannataro M
BMC Bioinformatics; 2010 Jun; 11():315. PubMed ID: 20537149
[TBL] [Abstract][Full Text] [Related]
18. The Gene Set Builder: collation, curation, and distribution of sets of genes.
Yusuf D; Lim JS; Wasserman WW
BMC Bioinformatics; 2005 Dec; 6():305. PubMed ID: 16371163
[TBL] [Abstract][Full Text] [Related]
19. Navigating protected genomics data with UCSC Genome Browser in a Box.
Haeussler M; Raney BJ; Hinrichs AS; Clawson H; Zweig AS; Karolchik D; Casper J; Speir ML; Haussler D; Kent WJ
Bioinformatics; 2015 Mar; 31(5):764-6. PubMed ID: 25348212
[TBL] [Abstract][Full Text] [Related]
20. GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed.
Chen R; Mallelwar R; Thosar A; Venkatasubrahmanyam S; Butte AJ
BMC Bioinformatics; 2008 Dec; 9():548. PubMed ID: 19094235
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
