201 related articles for article (PubMed ID: 25974373)
1. Pteros 2.0: Evolution of the fast parallel molecular analysis library for C++ and python.
Yesylevskyy SO
J Comput Chem; 2015 Jul; 36(19):1480-8. PubMed ID: 25974373
[TBL] [Abstract][Full Text] [Related]
2. Pteros: fast and easy to use open-source C++ library for molecular analysis.
Yesylevskyy SO
J Comput Chem; 2012 Jul; 33(19):1632-6. PubMed ID: 22539341
[TBL] [Abstract][Full Text] [Related]
3. DendroPy: a Python library for phylogenetic computing.
Sukumaran J; Holder MT
Bioinformatics; 2010 Jun; 26(12):1569-71. PubMed ID: 20421198
[TBL] [Abstract][Full Text] [Related]
4. Biskit--a software platform for structural bioinformatics.
Grünberg R; Nilges M; Leckner J
Bioinformatics; 2007 Mar; 23(6):769-70. PubMed ID: 17237072
[TBL] [Abstract][Full Text] [Related]
5. pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library.
Röst HL; Schmitt U; Aebersold R; Malmström L
Proteomics; 2014 Jan; 14(1):74-7. PubMed ID: 24420968
[TBL] [Abstract][Full Text] [Related]
6. A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank.
Smelter A; Astra M; Moseley HN
BMC Bioinformatics; 2017 Mar; 18(1):175. PubMed ID: 28302053
[TBL] [Abstract][Full Text] [Related]
7. Extending molecular simulation time scales: Parallel in time integrations for high-level quantum chemistry and complex force representations.
Bylaska EJ; Weare JQ; Weare JH
J Chem Phys; 2013 Aug; 139(7):074114. PubMed ID: 23968079
[TBL] [Abstract][Full Text] [Related]
8. Open source clustering software.
de Hoon MJ; Imoto S; Nolan J; Miyano S
Bioinformatics; 2004 Jun; 20(9):1453-4. PubMed ID: 14871861
[TBL] [Abstract][Full Text] [Related]
9. simuPOP: a forward-time population genetics simulation environment.
Peng B; Kimmel M
Bioinformatics; 2005 Sep; 21(18):3686-7. PubMed ID: 16020469
[TBL] [Abstract][Full Text] [Related]
10. SimService: a lightweight library for building simulation services in Python.
Sego TJ
Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38237907
[TBL] [Abstract][Full Text] [Related]
11. IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels.
Kasahara K; Kinoshita K
PLoS One; 2016; 11(12):e0167524. PubMed ID: 27907142
[TBL] [Abstract][Full Text] [Related]
12. libSRES: a C library for stochastic ranking evolution strategy for parameter estimation.
Ji X; Xu Y
Bioinformatics; 2006 Jan; 22(1):124-6. PubMed ID: 16267082
[TBL] [Abstract][Full Text] [Related]
13. MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories.
McGibbon RT; Beauchamp KA; Harrigan MP; Klein C; Swails JM; Hernández CX; Schwantes CR; Wang LP; Lane TJ; Pande VS
Biophys J; 2015 Oct; 109(8):1528-32. PubMed ID: 26488642
[TBL] [Abstract][Full Text] [Related]
14. Nmrglue: an open source Python package for the analysis of multidimensional NMR data.
Helmus JJ; Jaroniec CP
J Biomol NMR; 2013 Apr; 55(4):355-67. PubMed ID: 23456039
[TBL] [Abstract][Full Text] [Related]
15. PYCHEM: a multivariate analysis package for python.
Jarvis RM; Broadhurst D; Johnson H; O'Boyle NM; Goodacre R
Bioinformatics; 2006 Oct; 22(20):2565-6. PubMed ID: 16882648
[TBL] [Abstract][Full Text] [Related]
16. Expanding the Perseus Software for Omics Data Analysis With Custom Plugins.
Yu SH; Ferretti D; Schessner JP; Rudolph JD; Borner GHH; Cox J
Curr Protoc Bioinformatics; 2020 Sep; 71(1):e105. PubMed ID: 32931150
[TBL] [Abstract][Full Text] [Related]
17. A comparison of common programming languages used in bioinformatics.
Fourment M; Gillings MR
BMC Bioinformatics; 2008 Feb; 9():82. PubMed ID: 18251993
[TBL] [Abstract][Full Text] [Related]
18. BioC implementations in Go, Perl, Python and Ruby.
Liu W; Islamaj Doğan R; Kwon D; Marques H; Rinaldi F; Wilbur WJ; Comeau DC
Database (Oxford); 2014; 2014():. PubMed ID: 24961236
[TBL] [Abstract][Full Text] [Related]
19. MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory.
Marchetti L; Manca V
Bioinformatics; 2015 Apr; 31(8):1328-30. PubMed ID: 25504849
[TBL] [Abstract][Full Text] [Related]
20. Genetic Parallel Programming: design and implementation.
Cheang SM; Leung KS; Lee KH
Evol Comput; 2006; 14(2):129-56. PubMed ID: 16831104
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
