BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

473 related articles for article (PubMed ID: 25977293)

  • 1. Web-Beagle: a web server for the alignment of RNA secondary structures.
    Mattei E; Pietrosanto M; Ferrè F; Helmer-Citterich M
    Nucleic Acids Res; 2015 Jul; 43(W1):W493-7. PubMed ID: 25977293
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Gruber AR; Neuböck R; Hofacker IL; Washietl S
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W335-8. PubMed ID: 17452347
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MultiSETTER: web server for multiple RNA structure comparison.
    Čech P; Hoksza D; Svozil D
    BMC Bioinformatics; 2015 Aug; 16():253. PubMed ID: 26264783
    [TBL] [Abstract][Full Text] [Related]  

  • 7. R-Coffee: a web server for accurately aligning noncoding RNA sequences.
    Moretti S; Wilm A; Higgins DG; Xenarios I; Notredame C
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W10-3. PubMed ID: 18483080
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rtools: a web server for various secondary structural analyses on single RNA sequences.
    Hamada M; Ono Y; Kiryu H; Sato K; Kato Y; Fukunaga T; Mori R; Asai K
    Nucleic Acids Res; 2016 Jul; 44(W1):W302-7. PubMed ID: 27131356
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A simple protocol for the inference of RNA global pairwise alignments.
    Mattei E; Helmer-Citterich M; Ferrè F
    Methods Mol Biol; 2015; 1269():39-47. PubMed ID: 25577371
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.
    Wang CW; Chen KT; Lu CL
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W340-7. PubMed ID: 20507908
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.
    Di Tommaso P; Bussotti G; Kemena C; Capriotti E; Chatzou M; Prieto P; Notredame C
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W356-60. PubMed ID: 24972831
    [TBL] [Abstract][Full Text] [Related]  

  • 13. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
    Reeder J; Steffen P; Giegerich R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W320-4. PubMed ID: 17478505
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RADAR: a web server for RNA data analysis and research.
    Khaladkar M; Bellofatto V; Wang JT; Tian B; Shapiro BA
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W300-4. PubMed ID: 17517784
    [TBL] [Abstract][Full Text] [Related]  

  • 15. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking.
    Hua L; Song Y; Kim N; Laing C; Wang JT; Schlick T
    PLoS One; 2016; 11(1):e0147097. PubMed ID: 26789998
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
    Washietl S; Bernhart SH; Kellis M
    Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNA structure alignment by a unit-vector approach.
    Capriotti E; Marti-Renom MA
    Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BEAM web server: a tool for structural RNA motif discovery.
    Pietrosanto M; Adinolfi M; Casula R; Ausiello G; Ferrè F; Helmer-Citterich M
    Bioinformatics; 2018 Mar; 34(6):1058-1060. PubMed ID: 29095974
    [TBL] [Abstract][Full Text] [Related]  

  • 20. R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
    Rahrig RR; Petrov AI; Leontis NB; Zirbel CL
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W15-21. PubMed ID: 23716643
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.