158 related articles for article (PubMed ID: 25977818)
1. Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies.
Utturkar SM; Klingeman DM; Bruno-Barcena JM; Chinn MS; Grunden AM; Köpke M; Brown SD
Sci Data; 2015; 2():150014. PubMed ID: 25977818
[TBL] [Abstract][Full Text] [Related]
2. Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium.
Humphreys CM; McLean S; Schatschneider S; Millat T; Henstra AM; Annan FJ; Breitkopf R; Pander B; Piatek P; Rowe P; Wichlacz AT; Woods C; Norman R; Blom J; Goesman A; Hodgman C; Barrett D; Thomas NR; Winzer K; Minton NP
BMC Genomics; 2015 Dec; 16():1085. PubMed ID: 26692227
[TBL] [Abstract][Full Text] [Related]
3. The Long and Short of Genome Sequencing: Using a Hybrid Sequencing Strategy to Sequence Oral Microbial Genomes.
Heng NCK; Stanton JL
Methods Mol Biol; 2023; 2588():75-89. PubMed ID: 36418683
[TBL] [Abstract][Full Text] [Related]
4. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
5. Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.
Brown SD; Nagaraju S; Utturkar S; De Tissera S; Segovia S; Mitchell W; Land ML; Dassanayake A; Köpke M
Biotechnol Biofuels; 2014; 7():40. PubMed ID: 24655715
[TBL] [Abstract][Full Text] [Related]
6. Current state-of-art of sequencing technologies for plant genomics research.
Thudi M; Li Y; Jackson SA; May GD; Varshney RK
Brief Funct Genomics; 2012 Jan; 11(1):3-11. PubMed ID: 22345601
[TBL] [Abstract][Full Text] [Related]
7. The effects of read length, quality and quantity on microsatellite discovery and primer development: from Illumina to PacBio.
Wei N; Bemmels JB; Dick CW
Mol Ecol Resour; 2014 Sep; 14(5):953-65. PubMed ID: 24576200
[TBL] [Abstract][Full Text] [Related]
8. Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money.
Vincent AT; Derome N; Boyle B; Culley AI; Charette SJ
J Microbiol Methods; 2017 Jul; 138():60-71. PubMed ID: 26995332
[TBL] [Abstract][Full Text] [Related]
9. Sequence assembly using next generation sequencing data--challenges and solutions.
Chin FY; Leung HC; Yiu SM
Sci China Life Sci; 2014 Nov; 57(11):1140-8. PubMed ID: 25326069
[TBL] [Abstract][Full Text] [Related]
10. One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly.
Koren S; Phillippy AM
Curr Opin Microbiol; 2015 Feb; 23():110-20. PubMed ID: 25461581
[TBL] [Abstract][Full Text] [Related]
11. Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome.
Wang Y; Yu Y; Pan B; Hao P; Li Y; Shao Z; Xu X; Li X
BMC Syst Biol; 2012; 6 Suppl 3(Suppl 3):S21. PubMed ID: 23282199
[TBL] [Abstract][Full Text] [Related]
12. Characterization of structural variants with single molecule and hybrid sequencing approaches.
Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
[TBL] [Abstract][Full Text] [Related]
13. A hybrid approach for the automated finishing of bacterial genomes.
Bashir A; Klammer A; Robins WP; Chin CS; Webster D; Paxinos E; Hsu D; Ashby M; Wang S; Peluso P; Sebra R; Sorenson J; Bullard J; Yen J; Valdovino M; Mollova E; Luong K; Lin S; LaMay B; Joshi A; Rowe L; Frace M; Tarr CL; Turnsek M; Davis BM; Kasarskis A; Mekalanos JJ; Waldor MK; Schadt EE
Nat Biotechnol; 2012 Jul; 30(7):701-707. PubMed ID: 22750883
[TBL] [Abstract][Full Text] [Related]
14. Efficiency of PacBio long read correction by 2nd generation Illumina sequencing.
Mahmoud M; Zywicki M; Twardowski T; Karlowski WM
Genomics; 2019 Jan; 111(1):43-49. PubMed ID: 29268960
[TBL] [Abstract][Full Text] [Related]
15. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
16. Reducing assembly complexity of microbial genomes with single-molecule sequencing.
Koren S; Harhay GP; Smith TP; Bono JL; Harhay DM; Mcvey SD; Radune D; Bergman NH; Phillippy AM
Genome Biol; 2013; 14(9):R101. PubMed ID: 24034426
[TBL] [Abstract][Full Text] [Related]
17. Toward Complete Bacterial Genome Sequencing Through the Combined Use of Multiple Next-Generation Sequencing Platforms.
Jeong H; Lee DH; Ryu CM; Park SH
J Microbiol Biotechnol; 2016 Jan; 26(1):207-12. PubMed ID: 26464377
[TBL] [Abstract][Full Text] [Related]
18. PaSS: a sequencing simulator for PacBio sequencing.
Zhang W; Jia B; Wei C
BMC Bioinformatics; 2019 Jun; 20(1):352. PubMed ID: 31226925
[TBL] [Abstract][Full Text] [Related]
19. Multiplexed Non-barcoded Long-Read Sequencing and Assembling Genomes of Bacillus Strains in Error-Free Simulations.
Qian J; Meng Q; Feng Y; Mao X; Ling Y; Li J
Curr Microbiol; 2020 Jan; 77(1):79-84. PubMed ID: 31722044
[TBL] [Abstract][Full Text] [Related]
20. Reconstruction of Acetogenesis Pathway Using Short-Read Sequencing of Clostridium aceticum Genome.
Lee S; Song Y; Choe D; Cho S; Yu SJ; Cho Y; Kim SC; Cho BK
J Nanosci Nanotechnol; 2015 May; 15(5):3852-61. PubMed ID: 26505015
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]