153 related articles for article (PubMed ID: 25999311)
1. Structural impact of complete CpG methylation within target DNA on specific complex formation of the inducible transcription factor Egr-1.
Zandarashvili L; White MA; Esadze A; Iwahara J
FEBS Lett; 2015 Jul; 589(15):1748-53. PubMed ID: 25999311
[TBL] [Abstract][Full Text] [Related]
2. Potential role of DNA methylation as a facilitator of target search processes for transcription factors through interplay with methyl-CpG-binding proteins.
Kemme CA; Marquez R; Luu RH; Iwahara J
Nucleic Acids Res; 2017 Jul; 45(13):7751-7759. PubMed ID: 28486614
[TBL] [Abstract][Full Text] [Related]
3. Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism.
Arita K; Ariyoshi M; Tochio H; Nakamura Y; Shirakawa M
Nature; 2008 Oct; 455(7214):818-21. PubMed ID: 18772891
[TBL] [Abstract][Full Text] [Related]
4. Effect of CpG methylation on DNA binding protein: molecular dynamics simulations of the homeodomain PITX2 bound to the methylated DNA.
Yang SY; Yang XL; Yao LF; Wang HB; Sun CK
J Mol Graph Model; 2011 Jun; 29(7):920-7. PubMed ID: 21498098
[TBL] [Abstract][Full Text] [Related]
5. Influence of quasi-specific sites on kinetics of target DNA search by a sequence-specific DNA-binding protein.
Kemme CA; Esadze A; Iwahara J
Biochemistry; 2015 Nov; 54(44):6684-91. PubMed ID: 26502071
[TBL] [Abstract][Full Text] [Related]
6. Base-flipping propensities of unmethylated, hemimethylated, and fully methylated CpG sites.
Bianchi C; Zangi R
J Phys Chem B; 2013 Feb; 117(8):2348-58. PubMed ID: 23363335
[TBL] [Abstract][Full Text] [Related]
7. Structure-specific binding of MeCP2 to four-way junction DNA through its methyl CpG-binding domain.
Galvão TC; Thomas JO
Nucleic Acids Res; 2005; 33(20):6603-9. PubMed ID: 16314321
[TBL] [Abstract][Full Text] [Related]
8. Thermodynamic Additivity for Impacts of Base-Pair Substitutions on Association of the Egr-1 Zinc-Finger Protein with DNA.
Chattopadhyay A; Zandarashvili L; Luu RH; Iwahara J
Biochemistry; 2016 Nov; 55(47):6467-6474. PubMed ID: 27933778
[TBL] [Abstract][Full Text] [Related]
9. Hydration and recognition of methylated CpG steps in DNA.
Mayer-Jung C; Moras D; Timsit Y
EMBO J; 1998 May; 17(9):2709-18. PubMed ID: 9564052
[TBL] [Abstract][Full Text] [Related]
10. Symmetric and asymmetric DNA methylation in the human IGF2-H19 imprinted region.
Vu TH; Li T; Nguyen D; Nguyen BT; Yao XM; Hu JF; Hoffman AR
Genomics; 2000 Mar; 64(2):132-43. PubMed ID: 10729220
[TBL] [Abstract][Full Text] [Related]
11. MeCP2 binding to DNA depends upon hydration at methyl-CpG.
Ho KL; McNae IW; Schmiedeberg L; Klose RJ; Bird AP; Walkinshaw MD
Mol Cell; 2008 Feb; 29(4):525-31. PubMed ID: 18313390
[TBL] [Abstract][Full Text] [Related]
12. UHRF1 discriminates against binding to fully-methylated CpG-Sites by steric repulsion.
Bianchi C; Zangi R
Biophys Chem; 2013 Jan; 171():38-45. PubMed ID: 23245651
[TBL] [Abstract][Full Text] [Related]
13. The activity of the murine DNA methyltransferase Dnmt1 is controlled by interaction of the catalytic domain with the N-terminal part of the enzyme leading to an allosteric activation of the enzyme after binding to methylated DNA.
Fatemi M; Hermann A; Pradhan S; Jeltsch A
J Mol Biol; 2001 Jun; 309(5):1189-99. PubMed ID: 11399088
[TBL] [Abstract][Full Text] [Related]
14. Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso.
Buck-Koehntop BA; Stanfield RL; Ekiert DC; Martinez-Yamout MA; Dyson HJ; Wilson IA; Wright PE
Proc Natl Acad Sci U S A; 2012 Sep; 109(38):15229-34. PubMed ID: 22949637
[TBL] [Abstract][Full Text] [Related]
15. The solution structure of the domain from MeCP2 that binds to methylated DNA.
Wakefield RI; Smith BO; Nan X; Free A; Soteriou A; Uhrin D; Bird AP; Barlow PN
J Mol Biol; 1999 Sep; 291(5):1055-65. PubMed ID: 10518942
[TBL] [Abstract][Full Text] [Related]
16. Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1.
Zandarashvili L; Vuzman D; Esadze A; Takayama Y; Sahu D; Levy Y; Iwahara J
Proc Natl Acad Sci U S A; 2012 Jun; 109(26):E1724-32. PubMed ID: 22675124
[TBL] [Abstract][Full Text] [Related]
17. Specificity of Dnmt1 for methylation of hemimethylated CpG sites resides in its catalytic domain.
Bashtrykov P; Jankevicius G; Smarandache A; Jurkowska RZ; Ragozin S; Jeltsch A
Chem Biol; 2012 May; 19(5):572-8. PubMed ID: 22633409
[TBL] [Abstract][Full Text] [Related]
18. General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells.
Gebhard C; Benner C; Ehrich M; Schwarzfischer L; Schilling E; Klug M; Dietmaier W; Thiede C; Holler E; Andreesen R; Rehli M
Cancer Res; 2010 Feb; 70(4):1398-407. PubMed ID: 20145141
[TBL] [Abstract][Full Text] [Related]
19. CpG hypermethylation contributes to decreased expression of PTEN during acquired resistance to gefitinib in human lung cancer cell lines.
Maeda M; Murakami Y; Watari K; Kuwano M; Izumi H; Ono M
Lung Cancer; 2015 Mar; 87(3):265-71. PubMed ID: 25638724
[TBL] [Abstract][Full Text] [Related]
20. Effect of cytosine methylation on DNA-DNA recognition at CpG steps.
Mayer-Jung C; Moras D; Timsit Y
J Mol Biol; 1997 Jul; 270(3):328-35. PubMed ID: 9237900
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]