263 related articles for article (PubMed ID: 26024667)
1. MINT: software to identify motifs and short-range interactions in trajectories of nucleic acids.
Górska A; Jasiński M; Trylska J
Nucleic Acids Res; 2015 Sep; 43(17):e114. PubMed ID: 26024667
[TBL] [Abstract][Full Text] [Related]
2. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
Butcher SE; Pyle AM
Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
[TBL] [Abstract][Full Text] [Related]
3. Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques.
Malhotra A; Tan RK; Harvey SC
Biophys J; 1994 Jun; 66(6):1777-95. PubMed ID: 7521223
[TBL] [Abstract][Full Text] [Related]
4. Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model.
Zacharias M; Sklenar H
J Mol Biol; 1999 Jun; 289(2):261-75. PubMed ID: 10366504
[TBL] [Abstract][Full Text] [Related]
5. Quantitative analysis of nucleic acid three-dimensional structures.
Gendron P; Lemieux S; Major F
J Mol Biol; 2001 May; 308(5):919-36. PubMed ID: 11352582
[TBL] [Abstract][Full Text] [Related]
6. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
[TBL] [Abstract][Full Text] [Related]
7. Reconstitution of Functionally Active Thermus thermophilus 30S Ribosomal Subunit from Ribosomal 16S RNA and Ribosomal Proteins.
Agalarov S; Yusupov M; Yusupova G
Methods Mol Biol; 2016; 1320():303-14. PubMed ID: 26227051
[TBL] [Abstract][Full Text] [Related]
8. Novel features for identifying A-minors in three-dimensional RNA molecules.
Sheth P; Cervantes-Cervantes M; Nagula A; Laing C; Wang JT
Comput Biol Chem; 2013 Dec; 47():240-5. PubMed ID: 24211672
[TBL] [Abstract][Full Text] [Related]
9. RNAMotifScanX: a graph alignment approach for RNA structural motif identification.
Zhong C; Zhang S
RNA; 2015 Mar; 21(3):333-46. PubMed ID: 25595715
[TBL] [Abstract][Full Text] [Related]
10. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.
Lu XJ; Olson WK
Nucleic Acids Res; 2003 Sep; 31(17):5108-21. PubMed ID: 12930962
[TBL] [Abstract][Full Text] [Related]
11. Symmetry and structure of RNA and DNA triple helices.
Raghunathan G; Miles HT; Sasisekharan V
Biopolymers; 1995 Sep; 36(3):333-43. PubMed ID: 7545446
[TBL] [Abstract][Full Text] [Related]
12. Nucleic acid visualization with UCSF Chimera.
Couch GS; Hendrix DK; Ferrin TE
Nucleic Acids Res; 2006 Feb; 34(4):e29. PubMed ID: 16478715
[TBL] [Abstract][Full Text] [Related]
13. Coarse-grained simulations of RNA and DNA duplexes.
Cragnolini T; Derreumaux P; Pasquali S
J Phys Chem B; 2013 Jul; 117(27):8047-60. PubMed ID: 23730911
[TBL] [Abstract][Full Text] [Related]
14. RNA structure at high resolution.
Shen LX; Cai Z; Tinoco I
FASEB J; 1995 Aug; 9(11):1023-33. PubMed ID: 7544309
[TBL] [Abstract][Full Text] [Related]
15. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
Reinharz V; Major F; Waldispühl J
Bioinformatics; 2012 Jun; 28(12):i207-14. PubMed ID: 22689763
[TBL] [Abstract][Full Text] [Related]
16. On the truncation of long-range electrostatic interactions in DNA.
Norberg J; Nilsson L
Biophys J; 2000 Sep; 79(3):1537-53. PubMed ID: 10969015
[TBL] [Abstract][Full Text] [Related]
17. Geometric Patterns for Neighboring Bases Near the Stacked State in Nucleic Acid Strands.
Sedova A; Banavali NK
Biochemistry; 2017 Mar; 56(10):1426-1443. PubMed ID: 28187685
[TBL] [Abstract][Full Text] [Related]
18. Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome.
Huggins W; Ghosh SK; Wollenzien P
BMC Struct Biol; 2009 Jul; 9():49. PubMed ID: 19643000
[TBL] [Abstract][Full Text] [Related]
19. Barnaba: software for analysis of nucleic acid structures and trajectories.
Bottaro S; Bussi G; Pinamonti G; Reißer S; Boomsma W; Lindorff-Larsen K
RNA; 2019 Feb; 25(2):219-231. PubMed ID: 30420522
[TBL] [Abstract][Full Text] [Related]
20. Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loop.
Havrila M; Réblová K; Zirbel CL; Leontis NB; Šponer J
J Phys Chem B; 2013 Nov; 117(46):14302-19. PubMed ID: 24144333
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
