132 related articles for article (PubMed ID: 26037307)
1. RNA secondary structure prediction based on SHAPE data in helix regions.
Lotfi M; Zare-Mirakabad F; Montaseri S
J Theor Biol; 2015 Sep; 380():178-82. PubMed ID: 26037307
[TBL] [Abstract][Full Text] [Related]
2. Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data.
Montaseri S; Ganjtabesh M; Zare-Mirakabad F
PLoS One; 2016; 11(11):e0166965. PubMed ID: 27893832
[TBL] [Abstract][Full Text] [Related]
3. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
Yang J; Luo Z; Fang X; Wang J; Tang K
Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
[TBL] [Abstract][Full Text] [Related]
4. Novel and efficient RNA secondary structure prediction using hierarchical folding.
Jabbari H; Condon A; Zhao S
J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
[TBL] [Abstract][Full Text] [Related]
5. Free energy minimization to predict RNA secondary structures and computational RNA design.
Churkin A; Weinbrand L; Barash D
Methods Mol Biol; 2015; 1269():3-16. PubMed ID: 25577369
[TBL] [Abstract][Full Text] [Related]
6. Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data.
Wu Y; Shi B; Ding X; Liu T; Hu X; Yip KY; Yang ZR; Mathews DH; Lu ZJ
Nucleic Acids Res; 2015 Sep; 43(15):7247-59. PubMed ID: 26170232
[TBL] [Abstract][Full Text] [Related]
7. RNA secondary structure prediction based on free energy and phylogenetic analysis.
Juan V; Wilson C
J Mol Biol; 1999 Jun; 289(4):935-47. PubMed ID: 10369773
[TBL] [Abstract][Full Text] [Related]
8. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
9. Prediction of RNA secondary structure based on helical regions distribution.
WuJu L; JiaJin W
Bioinformatics; 1998; 14(8):700-6. PubMed ID: 9790689
[TBL] [Abstract][Full Text] [Related]
10. Analysis of energy-based algorithms for RNA secondary structure prediction.
Hajiaghayi M; Condon A; Hoos HH
BMC Bioinformatics; 2012 Feb; 13():22. PubMed ID: 22296803
[TBL] [Abstract][Full Text] [Related]
11. Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction.
Montaseri S; Zare-Mirakabad F; Ganjtabesh M
J Bioinform Comput Biol; 2017 Dec; 15(6):1750023. PubMed ID: 29113564
[TBL] [Abstract][Full Text] [Related]
12. RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.
Jabbari H; Wark I; Montemagno C
PLoS One; 2018; 13(4):e0194583. PubMed ID: 29621250
[TBL] [Abstract][Full Text] [Related]
13. Tertiary structure prediction of RNA-RNA complexes using a secondary structure and fragment-based method.
Yamasaki S; Hirokawa T; Asai K; Fukui K
J Chem Inf Model; 2014 Feb; 54(2):672-82. PubMed ID: 24479711
[TBL] [Abstract][Full Text] [Related]
14. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
Butcher SE; Pyle AM
Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
[TBL] [Abstract][Full Text] [Related]
15. Revolutions in RNA secondary structure prediction.
Mathews DH
J Mol Biol; 2006 Jun; 359(3):526-32. PubMed ID: 16500677
[TBL] [Abstract][Full Text] [Related]
16. PSRna: Prediction of small RNA secondary structures based on reverse complementary folding method.
Li J; Xu C; Wang L; Liang H; Feng W; Cai Z; Wang Y; Cong W; Liu Y
J Bioinform Comput Biol; 2016 Aug; 14(4):1643001. PubMed ID: 27045556
[TBL] [Abstract][Full Text] [Related]
17. Prospects for tertiary structure prediction of RNA based on secondary structure information.
Yamasaki S; Nakamura S; Fukui K
J Chem Inf Model; 2012 Feb; 52(2):557-67. PubMed ID: 22239168
[TBL] [Abstract][Full Text] [Related]
18. Integrating chemical footprinting data into RNA secondary structure prediction.
Zarringhalam K; Meyer MM; Dotu I; Chuang JH; Clote P
PLoS One; 2012; 7(10):e45160. PubMed ID: 23091593
[TBL] [Abstract][Full Text] [Related]
19. Energy-directed RNA structure prediction.
Hofacker IL
Methods Mol Biol; 2014; 1097():71-84. PubMed ID: 24639155
[TBL] [Abstract][Full Text] [Related]
20. RNA design using simulated SHAPE data.
Lotfi M; Zare-Mirakabad F; Montaseri S
Genes Genet Syst; 2018 May; 92(6):257-265. PubMed ID: 28757510
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]