BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

238 related articles for article (PubMed ID: 26039173)

  • 1. Quantitative interpretation of FRET experiments via molecular simulation: force field and validation.
    Best RB; Hofmann H; Nettels D; Schuler B
    Biophys J; 2015 Jun; 108(11):2721-31. PubMed ID: 26039173
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Combining Graphical and Analytical Methods with Molecular Simulations To Analyze Time-Resolved FRET Measurements of Labeled Macromolecules Accurately.
    Peulen TO; Opanasyuk O; Seidel CAM
    J Phys Chem B; 2017 Sep; 121(35):8211-8241. PubMed ID: 28709377
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comparing the Ability of Enhanced Sampling Molecular Dynamics Methods To Reproduce the Behavior of Fluorescent Labels on Proteins.
    Walczewska-Szewc K; Deplazes E; Corry B
    J Chem Theory Comput; 2015 Jul; 11(7):3455-65. PubMed ID: 26575779
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Discrepancies between conformational distributions of a polyalanine peptide in solution obtained from molecular dynamics force fields and amide I' band profiles.
    Verbaro D; Ghosh I; Nau WM; Schweitzer-Stenner R
    J Phys Chem B; 2010 Dec; 114(51):17201-8. PubMed ID: 21138254
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Intramolecular distances and dynamics from the combined photon statistics of single-molecule FRET and photoinduced electron transfer.
    Haenni D; Zosel F; Reymond L; Nettels D; Schuler B
    J Phys Chem B; 2013 Oct; 117(42):13015-28. PubMed ID: 23718771
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments.
    Grotz KK; Nueesch MF; Holmstrom ED; Heinz M; Stelzl LS; Schuler B; Hummer G
    J Phys Chem B; 2018 Dec; 122(49):11626-11639. PubMed ID: 30285443
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Effect of flexibility and cis residues in single-molecule FRET studies of polyproline.
    Best RB; Merchant KA; Gopich IV; Schuler B; Bax A; Eaton WA
    Proc Natl Acad Sci U S A; 2007 Nov; 104(48):18964-9. PubMed ID: 18029448
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural heterogeneity and quantitative FRET efficiency distributions of polyprolines through a hybrid atomistic simulation and Monte Carlo approach.
    Hoefling M; Lima N; Haenni D; Seidel CA; Schuler B; Grubmüller H
    PLoS One; 2011; 6(5):e19791. PubMed ID: 21629703
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Temperature-cycle single-molecule FRET microscopy on polyprolines.
    Yuan H; Xia T; Schuler B; Orrit M
    Phys Chem Chem Phys; 2011 Feb; 13(5):1762-9. PubMed ID: 21152580
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Conformation of prion protein repeat peptides probed by FRET measurements and molecular dynamics simulations.
    Gustiananda M; Liggins JR; Cummins PL; Gready JE
    Biophys J; 2004 Apr; 86(4):2467-83. PubMed ID: 15041684
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A 10-A spectroscopic ruler applied to short polyprolines.
    Sahoo H; Roccatano D; Hennig A; Nau WM
    J Am Chem Soc; 2007 Aug; 129(31):9762-72. PubMed ID: 17629273
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Complete Kinetic Theory of FRET.
    Eilert T; Kallis E; Nagy J; Röcker C; Michaelis J
    J Phys Chem B; 2018 Dec; 122(49):11677-11694. PubMed ID: 30351105
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Probing polyproline structure and dynamics by photoinduced electron transfer provides evidence for deviations from a regular polyproline type II helix.
    Doose S; Neuweiler H; Barsch H; Sauer M
    Proc Natl Acad Sci U S A; 2007 Oct; 104(44):17400-5. PubMed ID: 17956989
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Testing the use of molecular dynamics to simulate fluorophore motions and FRET.
    Deplazes E; Jayatilaka D; Corry B
    Phys Chem Chem Phys; 2011 Jun; 13(23):11045-54. PubMed ID: 21556410
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Simulation of FRET dyes allows quantitative comparison against experimental data.
    Reinartz I; Sinner C; Nettels D; Stucki-Buchli B; Stockmar F; Panek PT; Jacob CR; Nienhaus GU; Schuler B; Schug A
    J Chem Phys; 2018 Mar; 148(12):123321. PubMed ID: 29604831
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Combining short- and long-range fluorescence reporters with simulations to explore the intramolecular dynamics of an intrinsically disordered protein.
    Zosel F; Haenni D; Soranno A; Nettels D; Schuler B
    J Chem Phys; 2017 Oct; 147(15):152708. PubMed ID: 29055320
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Time-Resolved Fluorescence Anisotropy and Molecular Dynamics Analysis of a Novel GFP Homo-FRET Dimer.
    Teijeiro-Gonzalez Y; Crnjar A; Beavil AJ; Beavil RL; Nedbal J; Le Marois A; Molteni C; Suhling K
    Biophys J; 2021 Jan; 120(2):254-269. PubMed ID: 33345902
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Distance distributions of short polypeptides recovered by fluorescence resonance energy transfer in the 10 A domain.
    Sahoo H; Roccatano D; Zacharias M; Nau WM
    J Am Chem Soc; 2006 Jun; 128(25):8118-9. PubMed ID: 16787059
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Theory of FRET "Spectroscopic Ruler" for Short Distances: Application to Polyproline.
    Sobakinskaya E; Schmidt Am Busch M; Renger T
    J Phys Chem B; 2018 Jan; 122(1):54-67. PubMed ID: 29189003
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.
    Schuler B; Lipman EA; Steinbach PJ; Kumke M; Eaton WA
    Proc Natl Acad Sci U S A; 2005 Feb; 102(8):2754-9. PubMed ID: 15699337
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.