These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 26040460)

  • 1. quantro: a data-driven approach to guide the choice of an appropriate normalization method.
    Hicks SC; Irizarry RA
    Genome Biol; 2015 Jun; 16(1):117. PubMed ID: 26040460
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Smooth quantile normalization.
    Hicks SC; Okrah K; Paulson JN; Quackenbush J; Irizarry RA; Bravo HC
    Biostatistics; 2018 Apr; 19(2):185-198. PubMed ID: 29036413
    [TBL] [Abstract][Full Text] [Related]  

  • 3. missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
    Phipson B; Maksimovic J; Oshlack A
    Bioinformatics; 2016 Jan; 32(2):286-8. PubMed ID: 26424855
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips.
    Maksimovic J; Gordon L; Oshlack A
    Genome Biol; 2012 Jun; 13(6):R44. PubMed ID: 22703947
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TCC: an R package for comparing tag count data with robust normalization strategies.
    Sun J; Nishiyama T; Shimizu K; Kadota K
    BMC Bioinformatics; 2013 Jul; 14():219. PubMed ID: 23837715
    [TBL] [Abstract][Full Text] [Related]  

  • 6. oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.
    Sanges R; Cordero F; Calogero RA
    Bioinformatics; 2007 Dec; 23(24):3406-8. PubMed ID: 17875544
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
    Aryee MJ; Jaffe AE; Corrada-Bravo H; Ladd-Acosta C; Feinberg AP; Hansen KD; Irizarry RA
    Bioinformatics; 2014 May; 30(10):1363-9. PubMed ID: 24478339
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.
    Zhao H; Engelen K; De Moor B; Marchal K
    Bioinformatics; 2007 Jul; 23(13):1700-1. PubMed ID: 17485432
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data.
    Xiong H; Zhang D; Martyniuk CJ; Trudeau VL; Xia X
    BMC Bioinformatics; 2008 Jan; 9():25. PubMed ID: 18199333
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SpeCond: a method to detect condition-specific gene expression.
    Cavalli FM; Bourgon R; Vaquerizas JM; Luscombe NM
    Genome Biol; 2011 Oct; 12(10):R101. PubMed ID: 22008066
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data.
    Wang T; Guan W; Lin J; Boutaoui N; Canino G; Luo J; Celedón JC; Chen W
    Epigenetics; 2015; 10(7):662-9. PubMed ID: 26036609
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RCP: a novel probe design bias correction method for Illumina Methylation BeadChip.
    Niu L; Xu Z; Taylor JA
    Bioinformatics; 2016 Sep; 32(17):2659-63. PubMed ID: 27153672
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A statistical normalization method and differential expression analysis for RNA-seq data between different species.
    Zhou Y; Zhu J; Tong T; Wang J; Lin B; Zhang J
    BMC Bioinformatics; 2019 Mar; 20(1):163. PubMed ID: 30925894
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CGHnormaliter: a Bioconductor package for normalization of array CGH data with many CNAs.
    van Houte BP; Binsl TW; Hettling H; Heringa J
    Bioinformatics; 2010 May; 26(10):1366-7. PubMed ID: 20418341
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Hypothesis Testing Based Method for Normalization and Differential Expression Analysis of RNA-Seq Data.
    Zhou Y; Wang G; Zhang J; Li H
    PLoS One; 2017; 12(1):e0169594. PubMed ID: 28072846
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ChAMP: updated methylation analysis pipeline for Illumina BeadChips.
    Tian Y; Morris TJ; Webster AP; Yang Z; Beck S; Feber A; Teschendorff AE
    Bioinformatics; 2017 Dec; 33(24):3982-3984. PubMed ID: 28961746
    [TBL] [Abstract][Full Text] [Related]  

  • 17. funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types.
    Oros Klein K; Grinek S; Bernatsky S; Bouchard L; Ciampi A; Colmegna I; Fortin JP; Gao L; Hivert MF; Hudson M; Kobor MS; Labbe A; MacIsaac JL; Meaney MJ; Morin AM; O'Donnell KJ; Pastinen T; Van Ijzendoorn MH; Voisin G; Greenwood CM
    Bioinformatics; 2016 Feb; 32(4):593-5. PubMed ID: 26500152
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of different normalization assumptions for analyses of DNA methylation data from the cancer genome.
    Wang D; Zhang Y; Huang Y; Li P; Wang M; Wu R; Cheng L; Zhang W; Zhang Y; Li B; Wang C; Guo Z
    Gene; 2012 Sep; 506(1):36-42. PubMed ID: 22771920
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Removing technical variability in RNA-seq data using conditional quantile normalization.
    Hansen KD; Irizarry RA; Wu Z
    Biostatistics; 2012 Apr; 13(2):204-16. PubMed ID: 22285995
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Effect of normalization on significance testing for oligonucleotide microarrays.
    Parrish RS; Spencer HJ
    J Biopharm Stat; 2004 Aug; 14(3):575-89. PubMed ID: 15468753
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.