These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 26040460)

  • 21. MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome.
    Manor O; Borenstein E
    Genome Biol; 2015 Mar; 16(1):53. PubMed ID: 25885687
    [TBL] [Abstract][Full Text] [Related]  

  • 22. AffyRNADegradation: control and correction of RNA quality effects in GeneChip expression data.
    Fasold M; Binder H
    Bioinformatics; 2013 Jan; 29(1):129-31. PubMed ID: 23097420
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Removing Batch Effects from Longitudinal Gene Expression - Quantile Normalization Plus ComBat as Best Approach for Microarray Transcriptome Data.
    Müller C; Schillert A; Röthemeier C; Trégouët DA; Proust C; Binder H; Pfeiffer N; Beutel M; Lackner KJ; Schnabel RB; Tiret L; Wild PS; Blankenberg S; Zeller T; Ziegler A
    PLoS One; 2016; 11(6):e0156594. PubMed ID: 27272489
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Impact of DNA microarray data transformation on gene expression analysis - comparison of two normalization methods.
    Schmidt MT; Handschuh L; Zyprych J; Szabelska A; Olejnik-Schmidt AK; Siatkowski I; Figlerowicz M
    Acta Biochim Pol; 2011; 58(4):573-80. PubMed ID: 22187680
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Normalization and noise reduction for single cell RNA-seq experiments.
    Ding B; Zheng L; Zhu Y; Li N; Jia H; Ai R; Wildberg A; Wang W
    Bioinformatics; 2015 Jul; 31(13):2225-7. PubMed ID: 25717193
    [TBL] [Abstract][Full Text] [Related]  

  • 26. BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality using next generation sequencing data.
    Zhu W; Kuziora M; Creasy T; Lai Z; Morehouse C; Guo X; Sebastian Y; Shen D; Huang J; Dry JR; Xue F; Jiang L; Yao Y; Higgs BW
    Nucleic Acids Res; 2016 Feb; 44(4):e38. PubMed ID: 26578606
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Count ratio model reveals bias affecting NGS fold changes.
    Erhard F; Zimmer R
    Nucleic Acids Res; 2015 Nov; 43(20):e136. PubMed ID: 26160885
    [TBL] [Abstract][Full Text] [Related]  

  • 28. metahdep: meta-analysis of hierarchically dependent gene expression studies.
    Stevens JR; Nicholas G
    Bioinformatics; 2009 Oct; 25(19):2619-20. PubMed ID: 19648140
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments.
    Bacher R; Leng N; Chu LF; Ni Z; Thomson JA; Kendziorski C; Stewart R
    BMC Bioinformatics; 2018 Oct; 19(1):380. PubMed ID: 30326833
    [TBL] [Abstract][Full Text] [Related]  

  • 30. YuGene: a simple approach to scale gene expression data derived from different platforms for integrated analyses.
    Lê Cao KA; Rohart F; McHugh L; Korn O; Wells CA
    Genomics; 2014 Apr; 103(4):239-51. PubMed ID: 24667244
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Experimental Design and Bioinformatic Analysis of DNA Methylation Data.
    Medvedeva Y; Shershebnev A
    Methods Mol Biol; 2018; 1766():175-194. PubMed ID: 29605853
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.
    Lin Y; Golovnina K; Chen ZX; Lee HN; Negron YL; Sultana H; Oliver B; Harbison ST
    BMC Genomics; 2016 Jan; 17():28. PubMed ID: 26732976
    [TBL] [Abstract][Full Text] [Related]  

  • 33. GeneExpressionSignature: an R package for discovering functional connections using gene expression signatures.
    Li F; Cao Y; Han L; Cui X; Xie D; Wang S; Bo X
    OMICS; 2013 Feb; 17(2):116-8. PubMed ID: 23374109
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray.
    Yan PS; Potter D; Deatherage DE; Huang TH; Lin S
    Methods Mol Biol; 2009; 507():89-106. PubMed ID: 18987809
    [TBL] [Abstract][Full Text] [Related]  

  • 35. ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments.
    Nueda MJ; Ferrer A; Conesa A
    Biostatistics; 2012 Jul; 13(3):553-66. PubMed ID: 22085896
    [TBL] [Abstract][Full Text] [Related]  

  • 36. ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.
    Shen Y; Rahman M; Piccolo SR; Gusenleitner D; El-Chaar NN; Cheng L; Monti S; Bild AH; Johnson WE
    Bioinformatics; 2015 Jun; 31(11):1745-53. PubMed ID: 25617415
    [TBL] [Abstract][Full Text] [Related]  

  • 37. methscore: a comprehensive R function for DNA methylation-based health predictors.
    Xu Z; Niu L; Kresovich JK; Taylor JA
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38702768
    [TBL] [Abstract][Full Text] [Related]  

  • 38. FC1000: normalized gene expression changes of systematically perturbed human cells.
    Lönnstedt IM; Nelander S
    Stat Appl Genet Mol Biol; 2017 Sep; 16(4):217-242. PubMed ID: 28862994
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Multiplatform single-sample estimates of transcriptional activation.
    Piccolo SR; Withers MR; Francis OE; Bild AH; Johnson WE
    Proc Natl Acad Sci U S A; 2013 Oct; 110(44):17778-83. PubMed ID: 24128763
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets.
    Chawade A; Alexandersson E; Levander F
    J Proteome Res; 2014 Jun; 13(6):3114-20. PubMed ID: 24766612
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.