209 related articles for article (PubMed ID: 26049530)
21. Salt bridges do not stabilize polyproline II helices.
Whittington SJ; Creamer TP
Biochemistry; 2003 Dec; 42(49):14690-5. PubMed ID: 14661982
[TBL] [Abstract][Full Text] [Related]
22. Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: a combined molecular dynamics and time-resolved infrared spectroscopy study.
Paoli B; Seeber M; Backus EH; Ihalainen JA; Hamm P; Caflisch A
J Phys Chem B; 2009 Apr; 113(13):4435-42. PubMed ID: 19256526
[TBL] [Abstract][Full Text] [Related]
23. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
Spacková N; Réblová K; Sponer J
J Phys Chem B; 2010 Aug; 114(32):10581-93. PubMed ID: 20701388
[TBL] [Abstract][Full Text] [Related]
24. Peptide salt bridge stability: from gas phase via microhydration to bulk water simulations.
Pluhařová E; Marsalek O; Schmidt B; Jungwirth P
J Chem Phys; 2012 Nov; 137(18):185101. PubMed ID: 23163393
[TBL] [Abstract][Full Text] [Related]
25. Opening the Arg-Glu salt bridge in myosin: computational study.
Kaliman I; Grigorenko B; Shadrina M; Nemukhin A
Phys Chem Chem Phys; 2009 Jun; 11(24):4804-7. PubMed ID: 19506754
[TBL] [Abstract][Full Text] [Related]
26. Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability.
Wolny M; Batchelor M; Bartlett GJ; Baker EG; Kurzawa M; Knight PJ; Dougan L; Woolfson DN; Paci E; Peckham M
Sci Rep; 2017 Mar; 7():44341. PubMed ID: 28287151
[TBL] [Abstract][Full Text] [Related]
27. Effect of side chain length on intrahelical interactions between carboxylate- and guanidinium-containing amino acids.
Kuo HT; Yang PA; Wang WR; Hsu HC; Wu CH; Ting YT; Weng MH; Kuo LH; Cheng RP
Amino Acids; 2014 Aug; 46(8):1867-83. PubMed ID: 24744084
[TBL] [Abstract][Full Text] [Related]
28. Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent.
Sugita Y; Okamoto Y
Biophys J; 2005 May; 88(5):3180-90. PubMed ID: 15749777
[TBL] [Abstract][Full Text] [Related]
29. Stability and rigidity/flexibility-two sides of the same coin?
Mamonova TB; Glyakina AV; Galzitskaya OV; Kurnikova MG
Biochim Biophys Acta; 2013 May; 1834(5):854-66. PubMed ID: 23416444
[TBL] [Abstract][Full Text] [Related]
30. The α-defensin salt-bridge induces backbone stability to facilitate folding and confer proteolytic resistance.
Andersson HS; Figueredo SM; Haugaard-Kedström LM; Bengtsson E; Daly NL; Qu X; Craik DJ; Ouellette AJ; Rosengren KJ
Amino Acids; 2012 Oct; 43(4):1471-83. PubMed ID: 22286872
[TBL] [Abstract][Full Text] [Related]
31. Free energy landscape of a minimalist salt bridge model.
Li X; Lv C; Corbett KM; Zheng L; Wu D; Yang W
Protein Sci; 2016 Jan; 25(1):270-6. PubMed ID: 26300526
[TBL] [Abstract][Full Text] [Related]
32. Vibrational circular dichroism and IR spectral analysis as a test of theoretical conformational modeling for a cyclic hexapeptide.
Bour P; Kim J; Kapitan J; Hammer RP; Huang R; Wu L; Keiderling TA
Chirality; 2008 Nov; 20(10):1104-19. PubMed ID: 18506832
[TBL] [Abstract][Full Text] [Related]
33. Configurational entropy elucidates the role of salt-bridge networks in protein thermostability.
Missimer JH; Steinmetz MO; Baron R; Winkler FK; Kammerer RA; Daura X; van Gunsteren WF
Protein Sci; 2007 Jul; 16(7):1349-59. PubMed ID: 17586770
[TBL] [Abstract][Full Text] [Related]
34. Molecular dynamics simulations of peptides from the central domain of smooth muscle caldesmon.
Shepherd CM; van der Spoel D; Vogel HJ
J Biomol Struct Dyn; 2004 Feb; 21(4):555-66. PubMed ID: 14692799
[TBL] [Abstract][Full Text] [Related]
35. Comparison of Secondary Structure Formation Using 10 Different Force Fields in Microsecond Molecular Dynamics Simulations.
Cino EA; Choy WY; Karttunen M
J Chem Theory Comput; 2012 Aug; 8(8):2725-2740. PubMed ID: 22904695
[TBL] [Abstract][Full Text] [Related]
36. Salt-specific stability and denaturation of a short salt-bridge-forming alpha-helix.
Dzubiella J
J Am Chem Soc; 2008 Oct; 130(42):14000-7. PubMed ID: 18821757
[TBL] [Abstract][Full Text] [Related]
37. Why is the Arg5-Glu13 salt bridge conserved in mammalian alpha-defensins?
Wu Z; Li X; de Leeuw E; Ericksen B; Lu W
J Biol Chem; 2005 Dec; 280(52):43039-47. PubMed ID: 16246847
[TBL] [Abstract][Full Text] [Related]
38. Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results.
Langley DR
J Biomol Struct Dyn; 1998 Dec; 16(3):487-509. PubMed ID: 10052609
[TBL] [Abstract][Full Text] [Related]
39. Effect of lysine side chain length on intra-helical glutamate--lysine ion pairing interactions.
Cheng RP; Girinath P; Ahmad R
Biochemistry; 2007 Sep; 46(37):10528-37. PubMed ID: 17718542
[TBL] [Abstract][Full Text] [Related]
40. Effect of charged amino acid side chain length on lateral cross-strand interactions between carboxylate- and guanidinium-containing residues in a β-hairpin.
Kuo HT; Liu SL; Chiu WC; Fang CJ; Chang HC; Wang WR; Yang PA; Li JH; Huang SJ; Huang SL; Cheng RP
Amino Acids; 2015 May; 47(5):885-98. PubMed ID: 25646959
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
