BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

279 related articles for article (PubMed ID: 26070955)

  • 21. bakR: uncovering differential RNA synthesis and degradation kinetics transcriptome-wide with Bayesian hierarchical modeling.
    Vock IW; Simon MD
    RNA; 2023 Jul; 29(7):958-976. PubMed ID: 37028916
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.
    Lin Y; Golovnina K; Chen ZX; Lee HN; Negron YL; Sultana H; Oliver B; Harbison ST
    BMC Genomics; 2016 Jan; 17():28. PubMed ID: 26732976
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe.
    Vallabh S; Kartashov AV; Barski A
    Methods Mol Biol; 2018; 1783():343-360. PubMed ID: 29767371
    [TBL] [Abstract][Full Text] [Related]  

  • 24. SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.
    Benidt S; Nettleton D
    Bioinformatics; 2015 Jul; 31(13):2131-40. PubMed ID: 25725090
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A fuzzy method for RNA-Seq differential expression analysis in presence of multireads.
    Consiglio A; Mencar C; Grillo G; Marzano F; Caratozzolo MF; Liuni S
    BMC Bioinformatics; 2016 Nov; 17(Suppl 12):345. PubMed ID: 28185579
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A two-parameter generalized Poisson model to improve the analysis of RNA-seq data.
    Srivastava S; Chen L
    Nucleic Acids Res; 2010 Sep; 38(17):e170. PubMed ID: 20671027
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies.
    Li X; Cooper NGF; O'Toole TE; Rouchka EC
    BMC Genomics; 2020 Jan; 21(1):75. PubMed ID: 31992223
    [TBL] [Abstract][Full Text] [Related]  

  • 28. RNA-Seq Analysis Pipeline Based on Oshell Environment.
    Li J; Hu J; Newman M; Liu K; Ge H
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(5):973-8. PubMed ID: 26356868
    [TBL] [Abstract][Full Text] [Related]  

  • 29. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
    Shi Y; Chinnaiyan AM; Jiang H
    Bioinformatics; 2015 Jul; 31(13):2222-4. PubMed ID: 25717189
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Covariate-dependent negative binomial factor analysis of RNA sequencing data.
    Zamani Dadaneh S; Zhou M; Qian X
    Bioinformatics; 2018 Jul; 34(13):i61-i69. PubMed ID: 29949981
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
    Sturgill D; Malone JH; Sun X; Smith HE; Rabinow L; Samson ML; Oliver B
    BMC Bioinformatics; 2013 Nov; 14():320. PubMed ID: 24209455
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Differential correlation for sequencing data.
    Siska C; Kechris K
    BMC Res Notes; 2017 Jan; 10(1):54. PubMed ID: 28103954
    [TBL] [Abstract][Full Text] [Related]  

  • 33. RAP: A Web Tool for RNA-Seq Data Analysis.
    D'Antonio M; Libro P; Picardi E; Pesole G; Castrignanò T
    Methods Mol Biol; 2021; 2284():393-415. PubMed ID: 33835454
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.
    Bullard JH; Purdom E; Hansen KD; Dudoit S
    BMC Bioinformatics; 2010 Feb; 11():94. PubMed ID: 20167110
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Digital expression explorer 2: a repository of uniformly processed RNA sequencing data.
    Ziemann M; Kaspi A; El-Osta A
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30942868
    [TBL] [Abstract][Full Text] [Related]  

  • 37. edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test.
    Dimont E; Shi J; Kirchner R; Hide W
    Bioinformatics; 2015 Aug; 31(15):2589-90. PubMed ID: 25900919
    [TBL] [Abstract][Full Text] [Related]  

  • 38. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
    Li B; Dewey CN
    BMC Bioinformatics; 2011 Aug; 12():323. PubMed ID: 21816040
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq Samples.
    Zambelli F; Pavesi G
    Methods Mol Biol; 2021; 2284():77-96. PubMed ID: 33835439
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates.
    Al Seesi S; Tiagueu YT; Zelikovsky A; Măndoiu II
    BMC Genomics; 2014; 15 Suppl 8(Suppl 8):S2. PubMed ID: 25435284
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.