BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 26072512)

  • 1. Misassembly detection using paired-end sequence reads and optical mapping data.
    Muggli MD; Puglisi SJ; Ronen R; Boucher C
    Bioinformatics; 2015 Jun; 31(12):i80-8. PubMed ID: 26072512
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
    Lu CL; Chen KT; Huang SY; Chiu HT
    BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
    [TBL] [Abstract][Full Text] [Related]  

  • 3. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 4. metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies.
    Lai S; Pan S; Sun C; Coelho LP; Chen WH; Zhao XM
    Genome Biol; 2022 Nov; 23(1):242. PubMed ID: 36376928
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Aggressive assembly of pyrosequencing reads with mates.
    Miller JR; Delcher AL; Koren S; Venter E; Walenz BP; Brownley A; Johnson J; Li K; Mobarry C; Sutton G
    Bioinformatics; 2008 Dec; 24(24):2818-24. PubMed ID: 18952627
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SEQuel: improving the accuracy of genome assemblies.
    Ronen R; Boucher C; Chitsaz H; Pevzner P
    Bioinformatics; 2012 Jun; 28(12):i188-96. PubMed ID: 22689760
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A tool for analyzing mate pairs in assemblies (TAMPA).
    Dew IM; Walenz B; Sutton G
    J Comput Biol; 2005 Jun; 12(5):497-513. PubMed ID: 15952874
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SCARPA: scaffolding reads with practical algorithms.
    Donmez N; Brudno M
    Bioinformatics; 2013 Feb; 29(4):428-34. PubMed ID: 23274213
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GFinisher: a new strategy to refine and finish bacterial genome assemblies.
    Guizelini D; Raittz RT; Cruz LM; Souza EM; Steffens MB; Pedrosa FO
    Sci Rep; 2016 Oct; 6():34963. PubMed ID: 27721396
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SCOP: a novel scaffolding algorithm based on contig classification and optimization.
    Li M; Tang L; Wu FX; Pan Y; Wang J
    Bioinformatics; 2019 Apr; 35(7):1142-1150. PubMed ID: 30184046
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A compartmentalized approach to the assembly of physical maps.
    Bozdag S; Close TJ; Lonardi S
    BMC Bioinformatics; 2009 Jul; 10():217. PubMed ID: 19604400
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multi-CAR: a tool of contig scaffolding using multiple references.
    Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
    Boisvert S; Laviolette F; Corbeil J
    J Comput Biol; 2010 Nov; 17(11):1519-33. PubMed ID: 20958248
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The hidden perils of read mapping as a quality assessment tool in genome sequencing.
    Lehri B; Seddon AM; Karlyshev AV
    Sci Rep; 2017 Feb; 7():43149. PubMed ID: 28225089
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Assembly reconciliation.
    Zimin AV; Smith DR; Sutton G; Yorke JA
    Bioinformatics; 2008 Jan; 24(1):42-5. PubMed ID: 18057021
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ABySS: a parallel assembler for short read sequence data.
    Simpson JT; Wong K; Jackman SD; Schein JE; Jones SJ; Birol I
    Genome Res; 2009 Jun; 19(6):1117-23. PubMed ID: 19251739
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.
    Kosugi S; Hirakawa H; Tabata S
    Bioinformatics; 2015 Dec; 31(23):3733-41. PubMed ID: 26261222
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan.
    Utsunomiya AT; Santos DJ; Boison SA; Utsunomiya YT; Milanesi M; Bickhart DM; Ajmone-Marsan P; Sölkner J; Garcia JF; da Fonseca R; da Silva MV
    BMC Genomics; 2016 Sep; 17(1):705. PubMed ID: 27595709
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Blue: correcting sequencing errors using consensus and context.
    Greenfield P; Duesing K; Papanicolaou A; Bauer DC
    Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing.
    Zimin AV; Stevens KA; Crepeau MW; Puiu D; Wegrzyn JL; Yorke JA; Langley CH; Neale DB; Salzberg SL
    Gigascience; 2017 Jan; 6(1):1-4. PubMed ID: 28369353
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.