156 related articles for article (PubMed ID: 26072514)
21. Meta-IDBA: a de Novo assembler for metagenomic data.
Peng Y; Leung HC; Yiu SM; Chin FY
Bioinformatics; 2011 Jul; 27(13):i94-101. PubMed ID: 21685107
[TBL] [Abstract][Full Text] [Related]
22. Coverage-Versus-Length Plots, a Simple Quality Control Step for
Douglass AP; O'Brien CE; Offei B; Coughlan AY; Ortiz-Merino RA; Butler G; Byrne KP; Wolfe KH
G3 (Bethesda); 2019 Mar; 9(3):879-887. PubMed ID: 30674538
[TBL] [Abstract][Full Text] [Related]
23. Graph mining for next generation sequencing: leveraging the assembly graph for biological insights.
Warnke-Sommer J; Ali H
BMC Genomics; 2016 May; 17():340. PubMed ID: 27154001
[TBL] [Abstract][Full Text] [Related]
24. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB; Weisshaar B; Holtgräwe D
BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
[TBL] [Abstract][Full Text] [Related]
25. FSG: Fast String Graph Construction for De Novo Assembly.
Bonizzoni P; Vedova GD; Pirola Y; Previtali M; Rizzi R
J Comput Biol; 2017 Oct; 24(10):953-968. PubMed ID: 28715269
[TBL] [Abstract][Full Text] [Related]
26. IDBA-MT: de novo assembler for metatranscriptomic data generated from next-generation sequencing technology.
Leung HC; Yiu SM; Parkinson J; Chin FY
J Comput Biol; 2013 Jul; 20(7):540-50. PubMed ID: 23829653
[TBL] [Abstract][Full Text] [Related]
27. Accurate self-correction of errors in long reads using de Bruijn graphs.
Salmela L; Walve R; Rivals E; Ukkonen E
Bioinformatics; 2017 Mar; 33(6):799-806. PubMed ID: 27273673
[TBL] [Abstract][Full Text] [Related]
28. Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.
Wang S; Gribskov M
Bioinformatics; 2017 Feb; 33(3):327-333. PubMed ID: 28172640
[TBL] [Abstract][Full Text] [Related]
29. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
30. Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.
Savel D; LaFramboise T; Grama A; Koyuturk M
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1378-1388. PubMed ID: 27362987
[TBL] [Abstract][Full Text] [Related]
31. ISEA: Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution.
Li M; Liao Z; He Y; Wang J; Luo J; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(4):916-925. PubMed ID: 27076460
[TBL] [Abstract][Full Text] [Related]
32. Next-generation sequencing technologies and fragment assembly algorithms.
Lee H; Tang H
Methods Mol Biol; 2012; 855():155-74. PubMed ID: 22407708
[TBL] [Abstract][Full Text] [Related]
33. Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.
Cerveau N; Jackson DJ
BMC Bioinformatics; 2016 Dec; 17(1):525. PubMed ID: 27938328
[TBL] [Abstract][Full Text] [Related]
34. HGGA: hierarchical guided genome assembler.
Walve R; Salmela L
BMC Bioinformatics; 2022 May; 23(1):167. PubMed ID: 35525918
[TBL] [Abstract][Full Text] [Related]
35. Clustering of circular consensus sequences: accurate error correction and assembly of single molecule real-time reads from multiplexed amplicon libraries.
Francis F; Dumas MD; Davis SB; Wisser RJ
BMC Bioinformatics; 2018 Aug; 19(1):302. PubMed ID: 30126356
[TBL] [Abstract][Full Text] [Related]
36. BFC: correcting Illumina sequencing errors.
Li H
Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
[TBL] [Abstract][Full Text] [Related]
37. Comparison of different sequencing and assembly strategies for a repeat-rich fungal genome, Ophiocordyceps sinensis.
Li Y; Hsiang T; Yang RH; Hu XD; Wang K; Wang WJ; Wang XL; Jiao L; Yao YJ
J Microbiol Methods; 2016 Sep; 128():1-6. PubMed ID: 27343682
[TBL] [Abstract][Full Text] [Related]
38. Assembling short reads from jumping libraries with large insert sizes.
Vasilinetc I; Prjibelski AD; Gurevich A; Korobeynikov A; Pevzner PA
Bioinformatics; 2015 Oct; 31(20):3262-8. PubMed ID: 26040456
[TBL] [Abstract][Full Text] [Related]
39. A de novo metagenomic assembly program for shotgun DNA reads.
Lai B; Ding R; Li Y; Duan L; Zhu H
Bioinformatics; 2012 Jun; 28(11):1455-62. PubMed ID: 22495746
[TBL] [Abstract][Full Text] [Related]
40. Graph accordance of next-generation sequence assemblies.
Yao G; Ye L; Gao H; Minx P; Warren WC; Weinstock GM
Bioinformatics; 2012 Jan; 28(1):13-6. PubMed ID: 22025481
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]