These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 26100517)

  • 21. Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance.
    Baccarella A; Williams CR; Parrish JZ; Kim CC
    BMC Bioinformatics; 2018 Nov; 19(1):423. PubMed ID: 30428853
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.
    Łabaj PP; Leparc GG; Linggi BE; Markillie LM; Wiley HS; Kreil DP
    Bioinformatics; 2011 Jul; 27(13):i383-91. PubMed ID: 21685096
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events.
    Tilgner H; Jahanbani F; Blauwkamp T; Moshrefi A; Jaeger E; Chen F; Harel I; Bustamante CD; Rasmussen M; Snyder MP
    Nat Biotechnol; 2015 Jul; 33(7):736-42. PubMed ID: 25985263
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
    Jiang H; Lei R; Ding SW; Zhu S
    BMC Bioinformatics; 2014 Jun; 15():182. PubMed ID: 24925680
    [TBL] [Abstract][Full Text] [Related]  

  • 25. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
    Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
    Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
    [TBL] [Abstract][Full Text] [Related]  

  • 26. In Silico HLA Typing Using Standard RNA-Seq Sequence Reads.
    Boegel S; Scholtalbers J; Löwer M; Sahin U; Castle JC
    Methods Mol Biol; 2015; 1310():247-58. PubMed ID: 26024640
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities.
    Dacey DP; Chain FJJ
    BMC Bioinformatics; 2021 Oct; 22(1):493. PubMed ID: 34641782
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Quality Control and Analysis of NGS RNA Sequencing Data.
    Quinn EM; McManus R
    Methods Mol Biol; 2015; 1326():217-32. PubMed ID: 26498624
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Impact of sequencing depth and read length on single cell RNA sequencing data of T cells.
    Rizzetto S; Eltahla AA; Lin P; Bull R; Lloyd AR; Ho JWK; Venturi V; Luciani F
    Sci Rep; 2017 Oct; 7(1):12781. PubMed ID: 28986563
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length.
    Lou SK; Li JW; Qin H; Yim AK; Lo LY; Ni B; Leung KS; Tsui SK; Chan TF
    BMC Bioinformatics; 2011; 12 Suppl 5(Suppl 5):S2. PubMed ID: 21988959
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A statistical approach for 5' splice site prediction using short sequence motifs and without encoding sequence data.
    Meher PK; Sahu TK; Rao AR; Wahi SD
    BMC Bioinformatics; 2014 Nov; 15():362. PubMed ID: 25420551
    [TBL] [Abstract][Full Text] [Related]  

  • 32. ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.
    Mangul S; Yang HT; Strauli N; Gruhl F; Porath HT; Hsieh K; Chen L; Daley T; Christenson S; Wesolowska-Andersen A; Spreafico R; Rios C; Eng C; Smith AD; Hernandez RD; Ophoff RA; Santana JR; Levanon EY; Woodruff PG; Burchard E; Seibold MA; Shifman S; Eskin E; Zaitlen N
    Genome Biol; 2018 Feb; 19(1):36. PubMed ID: 29548336
    [TBL] [Abstract][Full Text] [Related]  

  • 33. MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.
    Wang K; Singh D; Zeng Z; Coleman SJ; Huang Y; Savich GL; He X; Mieczkowski P; Grimm SA; Perou CM; MacLeod JN; Chiang DY; Prins JF; Liu J
    Nucleic Acids Res; 2010 Oct; 38(18):e178. PubMed ID: 20802226
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Comprehensive analysis of Sichuan white geese (Anser cygnoides) transcriptome.
    Ding N; Han Q; Li Q; Zhao X; Li J; Su J; Wang Q
    Anim Sci J; 2014 Jun; 85(6):650-9. PubMed ID: 24725216
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Haplotype estimation using sequencing reads.
    Delaneau O; Howie B; Cox AJ; Zagury JF; Marchini J
    Am J Hum Genet; 2013 Oct; 93(4):687-96. PubMed ID: 24094745
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Detection of splice junctions from paired-end RNA-seq data by SpliceMap.
    Au KF; Jiang H; Lin L; Xing Y; Wong WH
    Nucleic Acids Res; 2010 Aug; 38(14):4570-8. PubMed ID: 20371516
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling.
    Palmieri N; Schlötterer C
    PLoS One; 2009 Jul; 4(7):e6323. PubMed ID: 19636379
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination.
    Van Nieuwerburgh F; Thompson RC; Ledesma J; Deforce D; Gaasterland T; Ordoukhanian P; Head SR
    Nucleic Acids Res; 2012 Feb; 40(3):e24. PubMed ID: 22127871
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS.
    Afik S; Raulet G; Yosef N
    Life Sci Alliance; 2019 Aug; 2(4):. PubMed ID: 31451449
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.
    Kinsella M; Harismendy O; Nakano M; Frazer KA; Bafna V
    Bioinformatics; 2011 Apr; 27(8):1068-75. PubMed ID: 21330288
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.