These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
22. SPECtre: a spectral coherence--based classifier of actively translated transcripts from ribosome profiling sequence data. Chun SY; Rodriguez CM; Todd PK; Mills RE BMC Bioinformatics; 2016 Nov; 17(1):482. PubMed ID: 27884106 [TBL] [Abstract][Full Text] [Related]
23. Rfoot: Transcriptome-Scale Identification of RNA-Protein Complexes from Ribosome Profiling Data. Ji Z Curr Protoc Mol Biol; 2018 Oct; 124(1):e66. PubMed ID: 30168907 [TBL] [Abstract][Full Text] [Related]
24. Ribosome profiling reveals an important role for translational control in circadian gene expression. Jang C; Lahens NF; Hogenesch JB; Sehgal A Genome Res; 2015 Dec; 25(12):1836-47. PubMed ID: 26338483 [TBL] [Abstract][Full Text] [Related]
27. Studying Selenoprotein mRNA Translation Using RNA-Seq and Ribosome Profiling. Dalley BK; Baird L; Howard MT Methods Mol Biol; 2018; 1661():103-123. PubMed ID: 28917040 [TBL] [Abstract][Full Text] [Related]
28. Genome-wide translational profiling by ribosome footprinting. Ingolia NT Methods Enzymol; 2010; 470():119-42. PubMed ID: 20946809 [TBL] [Abstract][Full Text] [Related]
29. High-resolution reconstruction of a Sehgal E; Wohlenberg C; Soukup EM; Viscardi MJ; Serrão VHB; Arribere JA RNA; 2024 Oct; 30(11):1513-1528. PubMed ID: 39209556 [No Abstract] [Full Text] [Related]
30. Translation complex profile sequencing to study the in vivo dynamics of mRNA-ribosome interactions during translation initiation, elongation and termination. Shirokikh NE; Archer SK; Beilharz TH; Powell D; Preiss T Nat Protoc; 2017 Apr; 12(4):697-731. PubMed ID: 28253237 [TBL] [Abstract][Full Text] [Related]
31. Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells. Popa A; Lebrigand K; Barbry P; Waldmann R BMC Genomics; 2016 Jan; 17():52. PubMed ID: 26764022 [TBL] [Abstract][Full Text] [Related]
32. The Plant Translatome Surveyed by Ribosome Profiling. Fujita T; Kurihara Y; Iwasaki S Plant Cell Physiol; 2019 Sep; 60(9):1917-1926. PubMed ID: 31004488 [TBL] [Abstract][Full Text] [Related]
33. Bayesian prediction of RNA translation from ribosome profiling. Malone B; Atanassov I; Aeschimann F; Li X; Großhans H; Dieterich C Nucleic Acids Res; 2017 Apr; 45(6):2960-2972. PubMed ID: 28126919 [TBL] [Abstract][Full Text] [Related]
34. Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling. Cope AL; Vellappan S; Favate JS; Skalenko KS; Yadavalli SS; Shah P Methods Mol Biol; 2022; 2404():83-110. PubMed ID: 34694605 [TBL] [Abstract][Full Text] [Related]
35. Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress. Lei L; Shi J; Chen J; Zhang M; Sun S; Xie S; Li X; Zeng B; Peng L; Hauck A; Zhao H; Song W; Fan Z; Lai J Plant J; 2015 Dec; 84(6):1206-18. PubMed ID: 26568274 [TBL] [Abstract][Full Text] [Related]
36. Mean of the typical decoding rates: a new translation efficiency index based on the analysis of ribosome profiling data. Dana A; Tuller T G3 (Bethesda); 2014 Dec; 5(1):73-80. PubMed ID: 25452418 [TBL] [Abstract][Full Text] [Related]
38. Estimation of ribosome profiling performance and reproducibility at various levels of resolution. Diament A; Tuller T Biol Direct; 2016 May; 11():24. PubMed ID: 27160013 [TBL] [Abstract][Full Text] [Related]
39. Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data. Zeng C; Fukunaga T; Hamada M BMC Genomics; 2018 May; 19(1):414. PubMed ID: 29843593 [TBL] [Abstract][Full Text] [Related]
40. Detecting actively translated open reading frames in ribosome profiling data. Calviello L; Mukherjee N; Wyler E; Zauber H; Hirsekorn A; Selbach M; Landthaler M; Obermayer B; Ohler U Nat Methods; 2016 Feb; 13(2):165-70. PubMed ID: 26657557 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]