These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

480 related articles for article (PubMed ID: 26110515)

  • 1. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
    Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R; Harrow J
    BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S2. PubMed ID: 26110515
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AceView: a comprehensive cDNA-supported gene and transcripts annotation.
    Thierry-Mieg D; Thierry-Mieg J
    Genome Biol; 2006; 7 Suppl 1(Suppl 1):S12.1-14. PubMed ID: 16925834
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GENCODE: producing a reference annotation for ENCODE.
    Harrow J; Denoeud F; Frankish A; Reymond A; Chen CK; Chrast J; Lagarde J; Gilbert JG; Storey R; Swarbreck D; Rossier C; Ucla C; Hubbard T; Antonarakis SE; Guigo R
    Genome Biol; 2006; 7 Suppl 1(Suppl 1):S4.1-9. PubMed ID: 16925838
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GENCODE: reference annotation for the human and mouse genomes in 2023.
    Frankish A; Carbonell-Sala S; Diekhans M; Jungreis I; Loveland JE; Mudge JM; Sisu C; Wright JC; Arnan C; Barnes I; Banerjee A; Bennett R; Berry A; Bignell A; Boix C; Calvet F; Cerdán-Vélez D; Cunningham F; Davidson C; Donaldson S; Dursun C; Fatima R; Giorgetti S; Giron CG; Gonzalez JM; Hardy M; Harrison PW; Hourlier T; Hollis Z; Hunt T; James B; Jiang Y; Johnson R; Kay M; Lagarde J; Martin FJ; Gómez LM; Nair S; Ni P; Pozo F; Ramalingam V; Ruffier M; Schmitt BM; Schreiber JM; Steed E; Suner MM; Sumathipala D; Sycheva I; Uszczynska-Ratajczak B; Wass E; Yang YT; Yates A; Zafrulla Z; Choudhary JS; Gerstein M; Guigo R; Hubbard TJP; Kellis M; Kundaje A; Paten B; Tress ML; Flicek P
    Nucleic Acids Res; 2023 Jan; 51(D1):D942-D949. PubMed ID: 36420896
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GENCODE: the reference human genome annotation for The ENCODE Project.
    Harrow J; Frankish A; Gonzalez JM; Tapanari E; Diekhans M; Kokocinski F; Aken BL; Barrell D; Zadissa A; Searle S; Barnes I; Bignell A; Boychenko V; Hunt T; Kay M; Mukherjee G; Rajan J; Despacio-Reyes G; Saunders G; Steward C; Harte R; Lin M; Howald C; Tanzer A; Derrien T; Chrast J; Walters N; Balasubramanian S; Pei B; Tress M; Rodriguez JM; Ezkurdia I; van Baren J; Brent M; Haussler D; Kellis M; Valencia A; Reymond A; Gerstein M; Guigó R; Hubbard TJ
    Genome Res; 2012 Sep; 22(9):1760-74. PubMed ID: 22955987
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SUsPECT: a pipeline for variant effect prediction based on custom long-read transcriptomes for improved clinical variant annotation.
    Salz R; Saraiva-Agostinho N; Vorsteveld E; van der Made CI; Kersten S; Stemerdink M; Allen J; Volders PJ; Hunt SE; Hoischen A; 't Hoen PAC
    BMC Genomics; 2023 Jun; 24(1):305. PubMed ID: 37280537
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of RefSeq protein-coding regions in human and vertebrate genomes.
    Fong JH; Murphy TD; Pruitt KD
    BMC Genomics; 2013 Sep; 14():654. PubMed ID: 24063302
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GASS: genome structural annotation for Eukaryotes based on species similarity.
    Wang Y; Chen L; Song N; Lei X
    BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
    [TBL] [Abstract][Full Text] [Related]  

  • 9. APPRIS 2017: principal isoforms for multiple gene sets.
    Rodriguez JM; Rodriguez-Rivas J; Di Domenico T; Vázquez J; Valencia A; Tress ML
    Nucleic Acids Res; 2018 Jan; 46(D1):D213-D217. PubMed ID: 29069475
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A joint NCBI and EMBL-EBI transcript set for clinical genomics and research.
    Morales J; Pujar S; Loveland JE; Astashyn A; Bennett R; Berry A; Cox E; Davidson C; Ermolaeva O; Farrell CM; Fatima R; Gil L; Goldfarb T; Gonzalez JM; Haddad D; Hardy M; Hunt T; Jackson J; Joardar VS; Kay M; Kodali VK; McGarvey KM; McMahon A; Mudge JM; Murphy DN; Murphy MR; Rajput B; Rangwala SH; Riddick LD; Thibaud-Nissen F; Threadgold G; Vatsan AR; Wallin C; Webb D; Flicek P; Birney E; Pruitt KD; Frankish A; Cunningham F; Murphy TD
    Nature; 2022 Apr; 604(7905):310-315. PubMed ID: 35388217
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
    Seok J; Xu W; Jiang H; Davis RW; Xiao W
    PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A variant by any name: quantifying annotation discordance across tools and clinical databases.
    Yen JL; Garcia S; Montana A; Harris J; Chervitz S; Morra M; West J; Chen R; Church DM
    Genome Med; 2017 Jan; 9(1):7. PubMed ID: 28122645
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification.
    Zhao S; Zhang B
    BMC Genomics; 2015 Feb; 16(1):97. PubMed ID: 25765860
    [TBL] [Abstract][Full Text] [Related]  

  • 14. APPRIS principal isoforms and MANE Select transcripts define reference splice variants.
    Pozo F; Rodriguez JM; Martínez Gómez L; Vázquez J; Tress ML
    Bioinformatics; 2022 Sep; 38(Suppl_2):ii89-ii94. PubMed ID: 36124785
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Incorporating the human gene annotations in different databases significantly improved transcriptomic and genetic analyses.
    Chen G; Wang C; Shi L; Qu X; Chen J; Yang J; Shi C; Chen L; Zhou P; Ning B; Tong W; Shi T
    RNA; 2013 Apr; 19(4):479-89. PubMed ID: 23431329
    [TBL] [Abstract][Full Text] [Related]  

  • 16. OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.
    Rago A; Gilbert DG; Choi JH; Sackton TB; Wang X; Kelkar YD; Werren JH; Colbourne JK
    BMC Genomics; 2016 Aug; 17(1):678. PubMed ID: 27561358
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets.
    Foissac S; Sammeth M
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W297-9. PubMed ID: 17485470
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Choice of transcripts and software has a large effect on variant annotation.
    McCarthy DJ; Humburg P; Kanapin A; Rivas MA; Gaulton K; Cazier JB; Donnelly P
    Genome Med; 2014; 6(3):26. PubMed ID: 24944579
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.
    Howald C; Tanzer A; Chrast J; Kokocinski F; Derrien T; Walters N; Gonzalez JM; Frankish A; Aken BL; Hourlier T; Vogel JH; White S; Searle S; Harrow J; Hubbard TJ; Guigó R; Reymond A
    Genome Res; 2012 Sep; 22(9):1698-710. PubMed ID: 22955982
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrating alternative splicing detection into gene prediction.
    Foissac S; Schiex T
    BMC Bioinformatics; 2005 Feb; 6():25. PubMed ID: 15705189
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.