BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

647 related articles for article (PubMed ID: 26130081)

  • 1. FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program.
    Lefort V; Desper R; Gascuel O
    Mol Biol Evol; 2015 Oct; 32(10):2798-800. PubMed ID: 26130081
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference.
    Bordewich M; Gascuel O; Huber KT; Moulton V
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):110-7. PubMed ID: 19179704
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting.
    Desper R; Gascuel O
    Mol Biol Evol; 2004 Mar; 21(3):587-98. PubMed ID: 14694080
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accuracy guarantees for phylogeny reconstruction algorithms based on balanced minimum evolution.
    Bordewich M; Mihaescu R
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(3):576-83. PubMed ID: 24091392
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle.
    Desper R; Gascuel O
    J Comput Biol; 2002; 9(5):687-705. PubMed ID: 12487758
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Getting a tree fast: Neighbor Joining, FastME, and distance-based methods.
    Desper R; Gascuel O
    Curr Protoc Bioinformatics; 2006 Oct; Chapter 6():Unit 6.3. PubMed ID: 18428768
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.
    Takahashi K; Nei M
    Mol Biol Evol; 2000 Aug; 17(8):1251-8. PubMed ID: 10908645
    [TBL] [Abstract][Full Text] [Related]  

  • 8. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
    Guindon S; Dufayard JF; Lefort V; Anisimova M; Hordijk W; Gascuel O
    Syst Biol; 2010 May; 59(3):307-21. PubMed ID: 20525638
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Maximum similarity: a new formulation of phylogenetic reconstruction.
    Huang X; Vingron M
    J Comput Biol; 2009 Jul; 16(7):887-96. PubMed ID: 19580518
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast computation of distance estimators.
    Elias I; Lagergren J
    BMC Bioinformatics; 2007 Mar; 8():89. PubMed ID: 17355623
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Robustness of phylogenetic inference based on minimum evolution.
    Pardi F; Guillemot S; Gascuel O
    Bull Math Biol; 2010 Oct; 72(7):1820-39. PubMed ID: 20449671
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference.
    Guindon S; Lethiec F; Duroux P; Gascuel O
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W557-9. PubMed ID: 15980534
    [TBL] [Abstract][Full Text] [Related]  

  • 13. morePhyML: improving the phylogenetic tree space exploration with PhyML 3.
    Criscuolo A
    Mol Phylogenet Evol; 2011 Dec; 61(3):944-8. PubMed ID: 21925283
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PQ, a new program for phylogeny reconstruction.
    Penzar D; Krivozubov M; Spirin S
    BMC Bioinformatics; 2018 Oct; 19(1):374. PubMed ID: 30314446
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joining.
    Guo MZ; Li JF; Liu Y
    BMC Bioinformatics; 2008 May; 9 Suppl 6(Suppl 6):S4. PubMed ID: 18541057
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The prevalence of multifurcations in tree-space and their implications for tree-search.
    Whelan S; Money D
    Mol Biol Evol; 2010 Dec; 27(12):2674-7. PubMed ID: 20584772
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.
    Evans J; Sheneman L; Foster J
    J Mol Evol; 2006 Jun; 62(6):785-92. PubMed ID: 16752216
    [TBL] [Abstract][Full Text] [Related]  

  • 18. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.
    Price MN; Dehal PS; Arkin AP
    Mol Biol Evol; 2009 Jul; 26(7):1641-50. PubMed ID: 19377059
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SMS: Smart Model Selection in PhyML.
    Lefort V; Longueville JE; Gascuel O
    Mol Biol Evol; 2017 Sep; 34(9):2422-2424. PubMed ID: 28472384
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Phylogeny inference based on spectral graph clustering.
    Zhang SB; Zhou SY; He JG; Lai JH
    J Comput Biol; 2011 Apr; 18(4):627-37. PubMed ID: 21352066
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.