89 related articles for article (PubMed ID: 26133456)
1. On the analysis and comparison of conformer-specific essential dynamics upon ligand binding to a protein.
Grosso M; Kalstein A; Parisi G; Roitberg AE; Fernandez-Alberti S
J Chem Phys; 2015 Jun; 142(24):245101. PubMed ID: 26133456
[TBL] [Abstract][Full Text] [Related]
2. Peptide binding to the PDZ3 domain by conformational selection.
Steiner S; Caflisch A
Proteins; 2012 Nov; 80(11):2562-72. PubMed ID: 22753014
[TBL] [Abstract][Full Text] [Related]
3. Creating conformational entropy by increasing interdomain mobility in ligand binding regulation: a revisit to N-terminal tandem PDZ domains of PSD-95.
Wang W; Weng J; Zhang X; Liu M; Zhang M
J Am Chem Soc; 2009 Jan; 131(2):787-96. PubMed ID: 19072119
[TBL] [Abstract][Full Text] [Related]
4. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
Eberini I; Guerini Rocco A; Ientile AR; Baptista AM; Gianazza E; Tomaselli S; Molinari H; Ragona L
Proteins; 2008 Jun; 71(4):1889-98. PubMed ID: 18175325
[TBL] [Abstract][Full Text] [Related]
5. Probing the structure and function of human glutaminase-interacting protein: a possible target for drug design.
Banerjee M; Huang C; Marquez J; Mohanty S
Biochemistry; 2008 Sep; 47(35):9208-19. PubMed ID: 18690705
[TBL] [Abstract][Full Text] [Related]
6. Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins.
Kurkcuoglu Z; Doruker P
PLoS One; 2016; 11(6):e0158063. PubMed ID: 27348230
[TBL] [Abstract][Full Text] [Related]
7. Free-energy landscapes of protein domain movements upon ligand binding.
Kondo HX; Okimoto N; Morimoto G; Taiji M
J Phys Chem B; 2011 Jun; 115(23):7629-36. PubMed ID: 21608983
[TBL] [Abstract][Full Text] [Related]
8. Promiscuous binding at the crossroads of numerous cancer pathways: insight from the binding of glutaminase interacting protein with glutaminase L.
Zoetewey DL; Ovee M; Banerjee M; Bhaskaran R; Mohanty S
Biochemistry; 2011 May; 50(17):3528-39. PubMed ID: 21417405
[TBL] [Abstract][Full Text] [Related]
9. Energy exchange network of inter-residue interactions within a thermally fluctuating protein molecule: A computational study.
Ishikura T; Iwata Y; Hatano T; Yamato T
J Comput Chem; 2015 Aug; 36(22):1709-18. PubMed ID: 26147235
[TBL] [Abstract][Full Text] [Related]
10. Long-Range Conformational Response of a PDZ Domain to Ligand Binding and Release: A Molecular Dynamics Study.
Lu C; Knecht V; Stock G
J Chem Theory Comput; 2016 Feb; 12(2):870-8. PubMed ID: 26683494
[TBL] [Abstract][Full Text] [Related]
11. Conformational flexibility of the MHC class I alpha1-alpha2 domain in peptide bound and free states: a molecular dynamics simulation study.
Zacharias M; Springer S
Biophys J; 2004 Oct; 87(4):2203-14. PubMed ID: 15454423
[TBL] [Abstract][Full Text] [Related]
12. Mapping the Dynamics Landscape of Conformational Transitions in Enzyme: The Adenylate Kinase Case.
Li D; Liu MS; Ji B
Biophys J; 2015 Aug; 109(3):647-60. PubMed ID: 26244746
[TBL] [Abstract][Full Text] [Related]
13. Structural ensemble of an intrinsically disordered polypeptide.
Mittal J; Yoo TH; Georgiou G; Truskett TM
J Phys Chem B; 2013 Jan; 117(1):118-24. PubMed ID: 23205890
[TBL] [Abstract][Full Text] [Related]
14. Conformational free energy modeling of druglike molecules by metadynamics in the WHIM space.
Spiwok V; Hlat-Glembová K; Tvaroška I; Králová B
J Chem Inf Model; 2012 Mar; 52(3):804-13. PubMed ID: 22360151
[TBL] [Abstract][Full Text] [Related]
15. Unraveling the Conformational Landscape of Ligand Binding to Glucose/Galactose-Binding Protein by Paramagnetic NMR and MD Simulations.
Unione L; Ortega G; Mallagaray A; Corzana F; Pérez-Castells J; Canales A; Jiménez-Barbero J; Millet O
ACS Chem Biol; 2016 Aug; 11(8):2149-57. PubMed ID: 27219646
[TBL] [Abstract][Full Text] [Related]
16. How maltose influences structural changes to bind to maltose-binding protein: results from umbrella sampling simulation.
Mascarenhas NM; Kästner J
Proteins; 2013 Feb; 81(2):185-98. PubMed ID: 22933379
[TBL] [Abstract][Full Text] [Related]
17. Investigation of the binding of a carbohydrate-mimetic peptide to its complementary anticarbohydrate antibody by STD-NMR spectroscopy and molecular-dynamics simulations.
Szczepina MG; Bleile DW; Pinto BM
Chemistry; 2011 Oct; 17(41):11446-55. PubMed ID: 21953925
[TBL] [Abstract][Full Text] [Related]
18. Elements and modulation of functional dynamics.
Gibbs AC
J Med Chem; 2014 Oct; 57(19):7819-37. PubMed ID: 24913411
[TBL] [Abstract][Full Text] [Related]
19. Exploring transition pathway and free-energy profile of large-scale protein conformational change by combining normal mode analysis and umbrella sampling molecular dynamics.
Wang J; Shao Q; Xu Z; Liu Y; Yang Z; Cossins BP; Jiang H; Chen K; Shi J; Zhu W
J Phys Chem B; 2014 Jan; 118(1):134-43. PubMed ID: 24350625
[TBL] [Abstract][Full Text] [Related]
20. A dynamic model of long-range conformational adaptations triggered by nucleotide binding in GroEL-GroES.
Skjaerven L; Muga A; Reuter N; Martinez A
Proteins; 2012 Oct; 80(10):2333-46. PubMed ID: 22576372
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]