101 related articles for article (PubMed ID: 26156781)
1. MOTIFSIM: A web tool for detecting similarity in multiple DNA motif datasets.
Tran NT; Huang CH
Biotechniques; 2015 Jul; 59(1):26-33. PubMed ID: 26156781
[TBL] [Abstract][Full Text] [Related]
2. MOTIFSIM 2.1: An Enhanced Software Platform for Detecting Similarity in Multiple DNA Motif Data Sets.
Tran NTL; Huang CH
J Comput Biol; 2017 Sep; 24(9):895-905. PubMed ID: 28632401
[TBL] [Abstract][Full Text] [Related]
3. Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets.
Tran NTL; Huang CH
J Comput Biol; 2017 May; 24(5):450-459. PubMed ID: 27606547
[TBL] [Abstract][Full Text] [Related]
4. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
[TBL] [Abstract][Full Text] [Related]
5. Performance evaluation for MOTIFSIM.
Tran NTL; Huang CH
Biol Proced Online; 2018; 20():23. PubMed ID: 30574025
[TBL] [Abstract][Full Text] [Related]
6. MODSIDE: a motif discovery pipeline and similarity detector.
Tran NTL; Huang CH
BMC Genomics; 2018 Oct; 19(1):755. PubMed ID: 30340511
[TBL] [Abstract][Full Text] [Related]
7. RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.
Thomas-Chollier M; Herrmann C; Defrance M; Sand O; Thieffry D; van Helden J
Nucleic Acids Res; 2012 Feb; 40(4):e31. PubMed ID: 22156162
[TBL] [Abstract][Full Text] [Related]
8. PMS: a panoptic motif search tool.
Dinh H; Rajasekaran S
PLoS One; 2013; 8(12):e80660. PubMed ID: 24324619
[TBL] [Abstract][Full Text] [Related]
9. Motif Tool Manager: a web-based framework for motif discovery.
Phan V; Furlotte NA
Bioinformatics; 2008 Dec; 24(24):2930-1. PubMed ID: 19017656
[TBL] [Abstract][Full Text] [Related]
10. ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets.
Deng W; Nickle DC; Learn GH; Maust B; Mullins JI
Bioinformatics; 2007 Sep; 23(17):2334-6. PubMed ID: 17586542
[TBL] [Abstract][Full Text] [Related]
11. A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.
Tran NT; Huang CH
Biol Direct; 2014 Feb; 9():4. PubMed ID: 24555784
[TBL] [Abstract][Full Text] [Related]
12. MotifViz: an analysis and visualization tool for motif discovery.
Fu Y; Frith MC; Haverty PM; Weng Z
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W420-3. PubMed ID: 15215422
[TBL] [Abstract][Full Text] [Related]
13. Minimotif miner 2nd release: a database and web system for motif search.
Rajasekaran S; Balla S; Gradie P; Gryk MR; Kadaveru K; Kundeti V; Maciejewski MW; Mi T; Rubino N; Vyas J; Schiller MR
Nucleic Acids Res; 2009 Jan; 37(Database issue):D185-90. PubMed ID: 18978024
[TBL] [Abstract][Full Text] [Related]
14. qPMS7: a fast algorithm for finding (ℓ, d)-motifs in DNA and protein sequences.
Dinh H; Rajasekaran S; Davila J
PLoS One; 2012; 7(7):e41425. PubMed ID: 22848493
[TBL] [Abstract][Full Text] [Related]
15. Detecting seeded motifs in DNA sequences.
Pizzi C; Bortoluzzi S; Bisognin A; Coppe A; Danieli GA
Nucleic Acids Res; 2005 Sep; 33(15):e135. PubMed ID: 16141193
[TBL] [Abstract][Full Text] [Related]
16. SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.
Hu Z; Fu Y; Halees AS; Kielbasa SM; Weng Z
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W235-41. PubMed ID: 15215387
[TBL] [Abstract][Full Text] [Related]
17. RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps.
Drory Retwitzer M; Polishchuk M; Churkin E; Kifer I; Yakhini Z; Barash D
Nucleic Acids Res; 2015 Jul; 43(W1):W507-12. PubMed ID: 25940619
[TBL] [Abstract][Full Text] [Related]
18. MEME-LaB: motif analysis in clusters.
Brown P; Baxter L; Hickman R; Beynon J; Moore JD; Ott S
Bioinformatics; 2013 Jul; 29(13):1696-7. PubMed ID: 23681125
[TBL] [Abstract][Full Text] [Related]
19. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
La D; Livesay DR
BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082
[TBL] [Abstract][Full Text] [Related]
20. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
Papatsenko D
Bioinformatics; 2007 Apr; 23(8):1032-4. PubMed ID: 17308342
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]