These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

235 related articles for article (PubMed ID: 26182917)

  • 21. jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data.
    Reisinger F; Krishna R; Ghali F; Ríos D; Hermjakob H; Vizcaíno JA; Jones AR
    Proteomics; 2012 Mar; 12(6):790-4. PubMed ID: 22539429
    [TBL] [Abstract][Full Text] [Related]  

  • 22. 2016 update of the PRIDE database and its related tools.
    Vizcaíno JA; Csordas A; del-Toro N; Dianes JA; Griss J; Lavidas I; Mayer G; Perez-Riverol Y; Reisinger F; Ternent T; Xu QW; Wang R; Hermjakob H
    Nucleic Acids Res; 2016 Jan; 44(D1):D447-56. PubMed ID: 26527722
    [TBL] [Abstract][Full Text] [Related]  

  • 23. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
    Hermjakob H; Montecchi-Palazzi L; Bader G; Wojcik J; Salwinski L; Ceol A; Moore S; Orchard S; Sarkans U; von Mering C; Roechert B; Poux S; Jung E; Mersch H; Kersey P; Lappe M; Li Y; Zeng R; Rana D; Nikolski M; Husi H; Brun C; Shanker K; Grant SG; Sander C; Bork P; Zhu W; Pandey A; Brazma A; Jacq B; Vidal M; Sherman D; Legrain P; Cesareni G; Xenarios I; Eisenberg D; Steipe B; Hogue C; Apweiler R
    Nat Biotechnol; 2004 Feb; 22(2):177-83. PubMed ID: 14755292
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A common open representation of mass spectrometry data and its application to proteomics research.
    Pedrioli PG; Eng JK; Hubley R; Vogelzang M; Deutsch EW; Raught B; Pratt B; Nilsson E; Angeletti RH; Apweiler R; Cheung K; Costello CE; Hermjakob H; Huang S; Julian RK; Kapp E; McComb ME; Oliver SG; Omenn G; Paton NW; Simpson R; Smith R; Taylor CF; Zhu W; Aebersold R
    Nat Biotechnol; 2004 Nov; 22(11):1459-66. PubMed ID: 15529173
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Submitting proteomics data to PRIDE using PRIDE Converter.
    Barsnes H; Vizcaíno JA; Reisinger F; Eidhammer I; Martens L
    Methods Mol Biol; 2011; 694():237-53. PubMed ID: 21082439
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PRIDEViewer: a novel user-friendly interface to visualize PRIDE XML files.
    Medina-Aunon JA; Carazo JM; Albar JP
    Proteomics; 2011 Jan; 11(2):334-7. PubMed ID: 21204261
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Using Laboratory Information Management Systems as central part of a proteomics data workflow.
    Stephan C; Kohl M; Turewicz M; Podwojski K; Meyer HE; Eisenacher M
    Proteomics; 2010 Mar; 10(6):1230-49. PubMed ID: 20077413
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow.
    Morisawa H; Hirota M; Toda T
    BMC Bioinformatics; 2006 Oct; 7():430. PubMed ID: 17018156
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Controlled vocabularies and ontologies in proteomics: overview, principles and practice.
    Mayer G; Jones AR; Binz PA; Deutsch EW; Orchard S; Montecchi-Palazzi L; Vizcaíno JA; Hermjakob H; Oveillero D; Julian R; Stephan C; Meyer HE; Eisenacher M
    Biochim Biophys Acta; 2014 Jan; 1844(1 Pt A):98-107. PubMed ID: 23429179
    [TBL] [Abstract][Full Text] [Related]  

  • 30. jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats.
    Griss J; Reisinger F; Hermjakob H; Vizcaíno JA
    Proteomics; 2012 Mar; 12(6):795-8. PubMed ID: 22539430
    [TBL] [Abstract][Full Text] [Related]  

  • 31. JAMI: a Java library for molecular interactions and data interoperability.
    Sivade Dumousseau M; Koch M; Shrivastava A; Alonso-López D; De Las Rivas J; Del-Toro N; Combe CW; Meldal BHM; Heimbach J; Rappsilber J; Sullivan J; Yehudi Y; Orchard S
    BMC Bioinformatics; 2018 Apr; 19(1):133. PubMed ID: 29642846
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Bioinformatics support for high-throughput proteomics.
    Wilke A; Rückert C; Bartels D; Dondrup M; Goesmann A; Hüser AT; Kespohl S; Linke B; Mahne M; McHardy A; Pühler A; Meyer F
    J Biotechnol; 2003 Dec; 106(2-3):147-56. PubMed ID: 14651857
    [TBL] [Abstract][Full Text] [Related]  

  • 33. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.
    Perez-Riverol Y; Uszkoreit J; Sanchez A; Ternent T; Del Toro N; Hermjakob H; Vizcaíno JA; Wang R
    Bioinformatics; 2015 Sep; 31(17):2903-5. PubMed ID: 25910694
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PRIDE and "Database on Demand" as valuable tools for computational proteomics.
    Vizcaíno JA; Reisinger F; Côté R; Martens L
    Methods Mol Biol; 2011; 696():93-105. PubMed ID: 21063943
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--Xindice.
    Li F; Li M; Xiao Z; Zhang P; Li J; Chen Z
    BMC Bioinformatics; 2006 Jan; 7():13. PubMed ID: 16403238
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A grid environment for high-throughput proteomics.
    Cannataro M; Barla A; Flor R; Jurman G; Merler S; Paoli S; Tradigo G; Veltri P; Furlanello C
    IEEE Trans Nanobioscience; 2007 Jun; 6(2):117-23. PubMed ID: 17695745
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
    Taylor CF; Paton NW; Garwood KL; Kirby PD; Stead DA; Yin Z; Deutsch EW; Selway L; Walker J; Riba-Garcia I; Mohammed S; Deery MJ; Howard JA; Dunkley T; Aebersold R; Kell DB; Lilley KS; Roepstorff P; Yates JR; Brass A; Brown AJ; Cash P; Gaskell SJ; Hubbard SJ; Oliver SG
    Nat Biotechnol; 2003 Mar; 21(3):247-54. PubMed ID: 12610571
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML.
    Ghali F; Krishna R; Lukasse P; Martínez-Bartolomé S; Reisinger F; Hermjakob H; Vizcaíno JA; Jones AR
    Mol Cell Proteomics; 2013 Nov; 12(11):3026-35. PubMed ID: 23813117
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SPLASH: systematic proteomics laboratory analysis and storage hub.
    Lo SL; You T; Lin Q; Joshi SB; Chung MC; Hew CL
    Proteomics; 2006 Mar; 6(6):1758-69. PubMed ID: 16456885
    [TBL] [Abstract][Full Text] [Related]  

  • 40. IPeak: An open source tool to combine results from multiple MS/MS search engines.
    Wen B; Du C; Li G; Ghali F; Jones AR; Käll L; Xu S; Zhou R; Ren Z; Feng Q; Xu X; Wang J
    Proteomics; 2015 Sep; 15(17):2916-20. PubMed ID: 25951428
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.