These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

260 related articles for article (PubMed ID: 26192992)

  • 21. Constructing Optimal Coarse-Grained Sites of Huge Biomolecules by Fluctuation Maximization.
    Li M; Zhang JZ; Xia F
    J Chem Theory Comput; 2016 Apr; 12(4):2091-100. PubMed ID: 26930392
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Multiscale simulation of small peptides: consistent conformational sampling in atomistic and coarse-grained models.
    Bezkorovaynaya O; Lukyanov A; Kremer K; Peter C
    J Comput Chem; 2012 Apr; 33(9):937-49. PubMed ID: 22298285
    [TBL] [Abstract][Full Text] [Related]  

  • 23. STOCK: structure mapper and online coarse-graining kit for molecular simulations.
    Bevc S; Junghans C; Praprotnik M
    J Comput Chem; 2015 Mar; 36(7):467-77. PubMed ID: 25504076
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Coarse-grained bond and angle distributions from atomistic simulations: On the systematic parameterisation of lipid models.
    Genheden S
    J Mol Graph Model; 2016 Jan; 63():57-64. PubMed ID: 26655333
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Extended DeepILST for Various Thermodynamic States and Applications in Coarse-Graining.
    Jeong J; Moradzadeh A; Aluru NR
    J Phys Chem A; 2022 Mar; 126(9):1562-1570. PubMed ID: 35201773
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Mimicking coarse-grained simulations without coarse-graining: enhanced sampling by damping short-range interactions.
    Wei D; Wang F
    J Chem Phys; 2010 Aug; 133(8):084101. PubMed ID: 20815554
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A new multiscale algorithm and its application to coarse-grained peptide models for self-assembly.
    Carmichael SP; Shell MS
    J Phys Chem B; 2012 Jul; 116(29):8383-93. PubMed ID: 22300263
    [TBL] [Abstract][Full Text] [Related]  

  • 28. IBIsCO: a molecular dynamics simulation package for coarse-grained simulation.
    Karimi-Varzaneh HA; Qian HJ; Chen X; Carbone P; Müller-Plathe F
    J Comput Chem; 2011 May; 32(7):1475-87. PubMed ID: 21425295
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Structure-based coarse-graining in liquid slabs.
    Jochum M; Andrienko D; Kremer K; Peter C
    J Chem Phys; 2012 Aug; 137(6):064102. PubMed ID: 22897250
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Systematic methods for structurally consistent coarse-grained models.
    Noid WG
    Methods Mol Biol; 2013; 924():487-531. PubMed ID: 23034761
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Iterative integral equation methods for structural coarse-graining.
    Bernhardt MP; Hanke M; van der Vegt NFA
    J Chem Phys; 2021 Feb; 154(8):084118. PubMed ID: 33639741
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Transport and dielectric properties of water and the influence of coarse-graining: comparing BMW, SPC/E, and TIP3P models.
    Braun D; Boresch S; Steinhauser O
    J Chem Phys; 2014 Feb; 140(6):064107. PubMed ID: 24527900
    [TBL] [Abstract][Full Text] [Related]  

  • 33. The role of many-body correlations in determining potentials for coarse-grained models of equilibrium structure.
    Rudzinski JF; Noid WG
    J Phys Chem B; 2012 Jul; 116(29):8621-35. PubMed ID: 22564079
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Effective force coarse-graining.
    Wang Y; Noid WG; Liu P; Voth GA
    Phys Chem Chem Phys; 2009 Mar; 11(12):2002-15. PubMed ID: 19280011
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The geometry of generalized force matching and related information metrics in coarse-graining of molecular systems.
    Kalligiannaki E; Harmandaris V; Katsoulakis MA; Plecháč P
    J Chem Phys; 2015 Aug; 143(8):084105. PubMed ID: 26328816
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Coarse-grained models using local-density potentials optimized with the relative entropy: Application to implicit solvation.
    Sanyal T; Shell MS
    J Chem Phys; 2016 Jul; 145(3):034109. PubMed ID: 27448876
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Systematic evaluation of bundled SPC water for biomolecular simulations.
    Gopal SM; Kuhn AB; Schäfer LV
    Phys Chem Chem Phys; 2015 Apr; 17(13):8393-406. PubMed ID: 25588773
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Coarse-graining involving virtual sites: Centers of symmetry coarse-graining.
    Jin J; Han Y; Voth GA
    J Chem Phys; 2019 Apr; 150(15):154103. PubMed ID: 31005091
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A stochastic optimization approach to coarse-graining using a relative-entropy framework.
    Bilionis I; Zabaras N
    J Chem Phys; 2013 Jan; 138(4):044313. PubMed ID: 23387590
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A comparative study of coarse-graining methods for polymeric fluids: Mori-Zwanzig vs. iterative Boltzmann inversion vs. stochastic parametric optimization.
    Li Z; Bian X; Yang X; Karniadakis GE
    J Chem Phys; 2016 Jul; 145(4):044102. PubMed ID: 27475343
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.