165 related articles for article (PubMed ID: 26231426)
21. ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.
Li G; Chen Y; Snyder MP; Zhang MQ
Nucleic Acids Res; 2017 Jan; 45(1):e4. PubMed ID: 27625391
[TBL] [Abstract][Full Text] [Related]
22. Chromatin interaction analysis using paired-end tag sequencing.
Fullwood MJ; Han Y; Wei CL; Ruan X; Ruan Y
Curr Protoc Mol Biol; 2010 Jan; Chapter 21():Unit 21.15.1-25. PubMed ID: 20069536
[TBL] [Abstract][Full Text] [Related]
23. BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
Chen X; Chen M; Ning K
Bioinformatics; 2006 Dec; 22(23):2952-4. PubMed ID: 17005537
[TBL] [Abstract][Full Text] [Related]
24. Multiplex chromatin interactions with single-molecule precision.
Zheng M; Tian SZ; Capurso D; Kim M; Maurya R; Lee B; Piecuch E; Gong L; Zhu JJ; Li Z; Wong CH; Ngan CY; Wang P; Ruan X; Wei CL; Ruan Y
Nature; 2019 Feb; 566(7745):558-562. PubMed ID: 30778195
[TBL] [Abstract][Full Text] [Related]
25. DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.
Liu T; Wang Z
PLoS Comput Biol; 2023 Jul; 19(7):e1011307. PubMed ID: 37440599
[TBL] [Abstract][Full Text] [Related]
26. A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.
Xu Z; Zhang G; Jin F; Chen M; Furey TS; Sullivan PF; Qin Z; Hu M; Li Y
Bioinformatics; 2016 Mar; 32(5):650-6. PubMed ID: 26543175
[TBL] [Abstract][Full Text] [Related]
27. MACPET: model-based analysis for ChIA-PET.
Vardaxis I; Drabløs F; Rye MB; Lindqvist BH
Biostatistics; 2020 Jul; 21(3):625-639. PubMed ID: 30698663
[TBL] [Abstract][Full Text] [Related]
28. MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences.
Wong KC
Bioinformatics; 2017 Oct; 33(19):3028-3035. PubMed ID: 28633280
[TBL] [Abstract][Full Text] [Related]
29. R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression.
Dawson JA; Ye S; Kendziorski C
Bioinformatics; 2012 Jul; 28(14):1939-40. PubMed ID: 22595207
[TBL] [Abstract][Full Text] [Related]
30. Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895565
[TBL] [Abstract][Full Text] [Related]
31. A co-module approach for elucidating drug-disease associations and revealing their molecular basis.
Zhao S; Li S
Bioinformatics; 2012 Apr; 28(7):955-61. PubMed ID: 22285830
[TBL] [Abstract][Full Text] [Related]
32. geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.
Pennell MW; Eastman JM; Slater GJ; Brown JW; Uyeda JC; FitzJohn RG; Alfaro ME; Harmon LJ
Bioinformatics; 2014 Aug; 30(15):2216-8. PubMed ID: 24728855
[TBL] [Abstract][Full Text] [Related]
33. IDR2D identifies reproducible genomic interactions.
Krismer K; Guo Y; Gifford DK
Nucleic Acids Res; 2020 Apr; 48(6):e31. PubMed ID: 32009147
[TBL] [Abstract][Full Text] [Related]
34. modSaRa: a computationally efficient R package for CNV identification.
Xiao F; Niu Y; Hao N; Xu Y; Jin Z; Zhang H
Bioinformatics; 2017 Aug; 33(15):2384-2385. PubMed ID: 28453611
[TBL] [Abstract][Full Text] [Related]
35. BioBayes: a software package for Bayesian inference in systems biology.
Vyshemirsky V; Girolami M
Bioinformatics; 2008 Sep; 24(17):1933-4. PubMed ID: 18632751
[TBL] [Abstract][Full Text] [Related]
36. A fully Bayesian hidden Ising model for ChIP-seq data analysis.
Mo Q
Biostatistics; 2012 Jan; 13(1):113-28. PubMed ID: 21914728
[TBL] [Abstract][Full Text] [Related]
37. In situ Chromatin Interaction Analysis Using Paired-End Tag Sequencing.
Wang P; Feng Y; Zhu K; Chai H; Chang YT; Yang X; Liu X; Shen C; Gega E; Lee B; Kim M; Ruan X; Ruan Y
Curr Protoc; 2021 Aug; 1(8):e174. PubMed ID: 34351700
[TBL] [Abstract][Full Text] [Related]
38. Mapping Active Gene-Associated Chromatin Loops by ChIA-PET in Rice.
Ouyang W; Li X
Methods Mol Biol; 2023; 2698():183-194. PubMed ID: 37682476
[TBL] [Abstract][Full Text] [Related]
39. Empirical Bayes screening of many p-values with applications to microarray studies.
Datta S; Datta S
Bioinformatics; 2005 May; 21(9):1987-94. PubMed ID: 15691856
[TBL] [Abstract][Full Text] [Related]
40. DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.
Taslim C; Huang T; Lin S
Bioinformatics; 2011 Jun; 27(11):1569-70. PubMed ID: 21471015
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
