BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 26231432)

  • 1. AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints.
    Profiti G; Fariselli P; Casadio R
    Bioinformatics; 2015 Dec; 31(23):3841-3. PubMed ID: 26231432
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HFSP: high speed homology-driven function annotation of proteins.
    Mahlich Y; Steinegger M; Rost B; Bromberg Y
    Bioinformatics; 2018 Jul; 34(13):i304-i312. PubMed ID: 29950013
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off.
    Dutheil JY; Figuet E
    BMC Bioinformatics; 2015 Jun; 16():190. PubMed ID: 26055961
    [TBL] [Abstract][Full Text] [Related]  

  • 4. INPS: predicting the impact of non-synonymous variations on protein stability from sequence.
    Fariselli P; Martelli PL; Savojardo C; Casadio R
    Bioinformatics; 2015 Sep; 31(17):2816-21. PubMed ID: 25957347
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
    Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
    Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
    Wang CK; Broder U; Weeratunga SK; Gasser RB; Loukas A; Hofmann A
    Bioinformatics; 2012 Apr; 28(7):1026-7. PubMed ID: 22332239
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein multiple sequence alignment benchmarking through secondary structure prediction.
    Le Q; Sievers F; Higgins DG
    Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
    [TBL] [Abstract][Full Text] [Related]  

  • 8. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reproducing the manual annotation of multiple sequence alignments using a SVM classifier.
    Blouin C; Perry S; Lavell A; Susko E; Roger AJ
    Bioinformatics; 2009 Dec; 25(23):3093-8. PubMed ID: 19770262
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.
    Jones DT; Singh T; Kosciolek T; Tetchner S
    Bioinformatics; 2015 Apr; 31(7):999-1006. PubMed ID: 25431331
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.
    Gracy J; Argos P
    Bioinformatics; 1998; 14(2):164-73. PubMed ID: 9545449
    [TBL] [Abstract][Full Text] [Related]  

  • 13. mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
    Dong R; Peng Z; Zhang Y; Yang J
    Bioinformatics; 2018 May; 34(10):1719-1725. PubMed ID: 29281009
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
    Ferragina P; Giancarlo R; Greco V; Manzini G; Valiente G
    BMC Bioinformatics; 2007 Jul; 8():252. PubMed ID: 17629909
    [TBL] [Abstract][Full Text] [Related]  

  • 15. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
    Hu J; Reinert K
    Bioinformatics; 2015 Feb; 31(3):363-72. PubMed ID: 25282642
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MAGNA: Maximizing Accuracy in Global Network Alignment.
    Saraph V; Milenković T
    Bioinformatics; 2014 Oct; 30(20):2931-40. PubMed ID: 25015987
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SW#db: GPU-Accelerated Exact Sequence Similarity Database Search.
    Korpar M; Šošić M; Blažeka D; Šikić M
    PLoS One; 2015; 10(12):e0145857. PubMed ID: 26719890
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GOAnno: GO annotation based on multiple alignment.
    Chalmel F; Lardenois A; Thompson JD; Muller J; Sahel JA; Léveillard T; Poch O
    Bioinformatics; 2005 May; 21(9):2095-6. PubMed ID: 15647299
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.
    Bartoli L; Fariselli P; Krogh A; Casadio R
    Bioinformatics; 2009 Nov; 25(21):2757-63. PubMed ID: 19744995
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points.
    Leimeister CA; Dencker T; Morgenstern B
    Bioinformatics; 2019 Jan; 35(2):211-218. PubMed ID: 29992260
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.