139 related articles for article (PubMed ID: 26246894)
1. Xander: employing a novel method for efficient gene-targeted metagenomic assembly.
Wang Q; Fish JA; Gilman M; Sun Y; Brown CT; Tiedje JM; Cole JR
Microbiome; 2015; 3():32. PubMed ID: 26246894
[TBL] [Abstract][Full Text] [Related]
2. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
[TBL] [Abstract][Full Text] [Related]
3. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes.
Guo J; Quensen JF; Sun Y; Wang Q; Brown CT; Cole JR; Tiedje JM
Front Genet; 2019; 10():957. PubMed ID: 31749830
[TBL] [Abstract][Full Text] [Related]
4. GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data.
Alves JM; de Oliveira AL; Sandberg TO; Moreno-Gallego JL; de Toledo MA; de Moura EM; Oliveira LS; Durham AM; Mehnert DU; Zanotto PM; Reyes A; Gruber A
Front Microbiol; 2016; 7():269. PubMed ID: 26973638
[TBL] [Abstract][Full Text] [Related]
5. Snowball: strain aware gene assembly of metagenomes.
Gregor I; Schönhuth A; McHardy AC
Bioinformatics; 2016 Sep; 32(17):i649-i657. PubMed ID: 27587685
[TBL] [Abstract][Full Text] [Related]
6. Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics.
Wu YW; Rho M; Doak TG; Ye Y
Bioinformatics; 2012 Sep; 28(18):i363-i369. PubMed ID: 22962453
[TBL] [Abstract][Full Text] [Related]
7. MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.
Li D; Luo R; Liu CM; Leung CM; Ting HF; Sadakane K; Yamashita H; Lam TW
Methods; 2016 Jun; 102():3-11. PubMed ID: 27012178
[TBL] [Abstract][Full Text] [Related]
8. Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A.
David L; Vicedomini R; Richard H; Carbone A
Bioinformatics; 2020 Jul; 36(13):3975-3981. PubMed ID: 32330240
[TBL] [Abstract][Full Text] [Related]
9. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets.
Reddy RM; Mohammed MH; Mande SS
Genomics; 2014; 103(2-3):161-8. PubMed ID: 24607570
[TBL] [Abstract][Full Text] [Related]
10. Graph-Based Approaches Significantly Improve the Recovery of Antibiotic Resistance Genes From Complex Metagenomic Datasets.
Shafranskaya D; Chori A; Korobeynikov A
Front Microbiol; 2021; 12():714836. PubMed ID: 34690959
[TBL] [Abstract][Full Text] [Related]
11. Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis.
Ye Y; Tang H
Bioinformatics; 2016 Apr; 32(7):1001-8. PubMed ID: 26319390
[TBL] [Abstract][Full Text] [Related]
12. MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning.
Afiahayati ; Sato K; Sakakibara Y
DNA Res; 2015 Feb; 22(1):69-77. PubMed ID: 25431440
[TBL] [Abstract][Full Text] [Related]
13. Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation.
Celaj A; Markle J; Danska J; Parkinson J
Microbiome; 2014; 2():39. PubMed ID: 25411636
[TBL] [Abstract][Full Text] [Related]
14. Assembling metagenomes, one community at a time.
van der Walt AJ; van Goethem MW; Ramond JB; Makhalanyane TP; Reva O; Cowan DA
BMC Genomics; 2017 Jul; 18(1):521. PubMed ID: 28693474
[TBL] [Abstract][Full Text] [Related]
15. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
Bose T; Haque MM; Reddy C; Mande SS
PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
[TBL] [Abstract][Full Text] [Related]
16. A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics.
Tang H; Li S; Ye Y
PLoS Comput Biol; 2016 Dec; 12(12):e1005224. PubMed ID: 27918579
[TBL] [Abstract][Full Text] [Related]
17. PanFP: pangenome-based functional profiles for microbial communities.
Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
[TBL] [Abstract][Full Text] [Related]
18. Integrated
Thippabhotla S; Liu B; Podgorny A; Yooseph S; Yang Y; Zhang J; Zhong C
NAR Genom Bioinform; 2023 Mar; 5(1):lqad023. PubMed ID: 36915411
[TBL] [Abstract][Full Text] [Related]
19. Kelpie: generating full-length 'amplicons' from whole-metagenome datasets.
Greenfield P; Tran-Dinh N; Midgley D
PeerJ; 2019; 6():e6174. PubMed ID: 30723610
[TBL] [Abstract][Full Text] [Related]
20. DIME: a novel framework for de novo metagenomic sequence assembly.
Guo X; Yu N; Ding X; Wang J; Pan Y
J Comput Biol; 2015 Feb; 22(2):159-77. PubMed ID: 25684202
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]