BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

374 related articles for article (PubMed ID: 26250111)

  • 1. High speed BLASTN: an accelerated MegaBLAST search tool.
    Chen Y; Ye W; Zhang Y; Xu Y
    Nucleic Acids Res; 2015 Sep; 43(16):7762-8. PubMed ID: 26250111
    [TBL] [Abstract][Full Text] [Related]  

  • 2. G-BLASTN: accelerating nucleotide alignment by graphics processors.
    Zhao K; Chu X
    Bioinformatics; 2014 May; 30(10):1384-91. PubMed ID: 24463183
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Database indexing for production MegaBLAST searches.
    Morgulis A; Coulouris G; Raytselis Y; Madden TL; Agarwala R; Schäffer AA
    Bioinformatics; 2008 Aug; 24(16):1757-64. PubMed ID: 18567917
    [TBL] [Abstract][Full Text] [Related]  

  • 4. H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.
    Ye W; Chen Y; Zhang Y; Xu Y
    Bioinformatics; 2017 Apr; 33(8):1130-1138. PubMed ID: 28087515
    [TBL] [Abstract][Full Text] [Related]  

  • 5. muBLASTP: database-indexed protein sequence search on multicore CPUs.
    Zhang J; Misra S; Wang H; Feng WC
    BMC Bioinformatics; 2016 Nov; 17(1):443. PubMed ID: 27809763
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Finding Similar Nucleotide Sequences Using Network BLAST Searches.
    Ladunga I
    Curr Protoc Bioinformatics; 2017 Jun; 58():3.3.1-3.3.25. PubMed ID: 28654728
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Finding similar nucleotide sequences using network BLAST searches.
    Ladunga I
    Curr Protoc Bioinformatics; 2009 Jun; Chapter 3():3.3.1-3.3.26. PubMed ID: 19496060
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparing compressed sequences for faster nucleotide BLAST searches.
    Cameron M; Williams HE
    IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(3):349-64. PubMed ID: 17666756
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters.
    Cheng T; Chin PJ; Cha K; Petrick N; Mikailov M
    BMC Bioinformatics; 2022 Dec; 23(1):544. PubMed ID: 36526957
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mastering seeds for genomic size nucleotide BLAST searches.
    Gotea V; Veeramachaneni V; Makałowski W
    Nucleic Acids Res; 2003 Dec; 31(23):6935-41. PubMed ID: 14627826
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BLAST: improvements for better sequence analysis.
    Ye J; McGinnis S; Madden TL
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W6-9. PubMed ID: 16845079
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SW#db: GPU-Accelerated Exact Sequence Similarity Database Search.
    Korpar M; Šošić M; Blažeka D; Šikić M
    PLoS One; 2015; 10(12):e0145857. PubMed ID: 26719890
    [TBL] [Abstract][Full Text] [Related]  

  • 13. miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST.
    Kim YJ; Boyd A; Athey BD; Patel JM
    Nucleic Acids Res; 2005; 33(13):4335-44. PubMed ID: 16061938
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CLAST: CUDA implemented large-scale alignment search tool.
    Yano M; Mori H; Akiyama Y; Yamada T; Kurokawa K
    BMC Bioinformatics; 2014 Dec; 15(1):406. PubMed ID: 25495907
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
    Hauser M; Steinegger M; Söding J
    Bioinformatics; 2016 May; 32(9):1323-30. PubMed ID: 26743509
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MPI-blastn and NCBI-TaxCollector: improving metagenomic analysis with high performance classification and wide taxonomic attachment.
    Dias R; Xavier MG; Rossi FD; Neves MV; Lange TA; Giongo A; De Rose CA; Triplett EW
    J Bioinform Comput Biol; 2014 Jun; 12(3):1450013. PubMed ID: 24969751
    [TBL] [Abstract][Full Text] [Related]  

  • 17. AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts.
    Lavorgna G; Triunfo R; Santoni F; Orfanelli U; Noci S; Bulfone A; Zanetti G; Casari G
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W665-8. PubMed ID: 15980558
    [TBL] [Abstract][Full Text] [Related]  

  • 18. WindowMasker: window-based masker for sequenced genomes.
    Morgulis A; Gertz EM; Schäffer AA; Agarwala R
    Bioinformatics; 2006 Jan; 22(2):134-41. PubMed ID: 16287941
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments.
    Daily J
    BMC Bioinformatics; 2016 Feb; 17():81. PubMed ID: 26864881
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient computation of spaced seeds.
    Ilie S
    BMC Res Notes; 2012 Feb; 5():123. PubMed ID: 22373455
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.