These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 26254489)

  • 1. TIPR: transcription initiation pattern recognition on a genome scale.
    Morton T; Wong WK; Megraw M
    Bioinformatics; 2015 Dec; 31(23):3725-32. PubMed ID: 26254489
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
    Čuklina J; Hahn J; Imakaev M; Omasits U; Förstner KU; Ljubimov N; Goebel M; Pessi G; Fischer HM; Ahrens CH; Gelfand MS; Evguenieva-Hackenberg E
    BMC Genomics; 2016 Apr; 17():302. PubMed ID: 27107716
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Annotating TSSs in Multiple Cell Types Based on DNA Sequence and RNA-seq Data via DeeReCT-TSS.
    Zhou J; Zhang B; Li H; Zhou L; Li Z; Long Y; Han W; Wang M; Cui H; Li J; Chen W; Gao X
    Genomics Proteomics Bioinformatics; 2022 Oct; 20(5):959-973. PubMed ID: 36528241
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data.
    Bedo J; Kowalczyk A
    Bioinformatics; 2011 Jun; 27(12):1610-7. PubMed ID: 21558156
    [TBL] [Abstract][Full Text] [Related]  

  • 5. High sensitivity TSS prediction: estimates of locations where TSS cannot occur.
    Schaefer U; Kodzius R; Kai C; Kawai J; Carninci P; Hayashizaki Y; Bajic VB
    PLoS One; 2010 Nov; 5(11):e13934. PubMed ID: 21085627
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computational annotation of miRNA transcription start sites.
    Wang S; Talukder A; Cha M; Li X; Hu H
    Brief Bioinform; 2021 Jan; 22(1):380-392. PubMed ID: 32003428
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-Wide Prediction of Transcription Start Sites in Conifers.
    Bondar EI; Troukhan ME; Krutovsky KV; Tatarinova TV
    Int J Mol Sci; 2022 Feb; 23(3):. PubMed ID: 35163661
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A two-stream convolutional neural network for microRNA transcription start site feature integration and identification.
    Cha M; Zheng H; Talukder A; Barham C; Li X; Hu H
    Sci Rep; 2021 Mar; 11(1):5625. PubMed ID: 33707582
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying cell-specific microRNA transcriptional start sites.
    Hua X; Chen L; Wang J; Li J; Wingender E
    Bioinformatics; 2016 Aug; 32(16):2403-10. PubMed ID: 27153609
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.
    Rach EA; Yuan HY; Majoros WH; Tomancak P; Ohler U
    Genome Biol; 2009; 10(7):R73. PubMed ID: 19589141
    [TBL] [Abstract][Full Text] [Related]  

  • 11. refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.
    Abugessaisa I; Noguchi S; Hasegawa A; Kondo A; Kawaji H; Carninci P; Kasukawa T
    J Mol Biol; 2019 Jun; 431(13):2407-2422. PubMed ID: 31075273
    [TBL] [Abstract][Full Text] [Related]  

  • 12. TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data.
    Jorjani H; Zavolan M
    Bioinformatics; 2014 Apr; 30(7):971-4. PubMed ID: 24371151
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ab initio identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq.
    Liu Y; Han D; Han Y; Yan Z; Xie B; Li J; Qiao N; Hu H; Khaitovich P; Gao Y; Han JD
    Nucleic Acids Res; 2011 Mar; 39(4):1408-18. PubMed ID: 20952408
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis.
    Yokomori R; Shimai K; Nishitsuji K; Suzuki Y; Kusakabe TG; Nakai K
    Genome Res; 2016 Jan; 26(1):140-50. PubMed ID: 26668163
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Global identification of transcription start sites in the genome of Apis mellifera using 5'LongSAGE.
    Zheng H; Sun L; Peng W; Shen Y; Wang Y; Xu B; Gu W; Chen S; Huang Z; Wang S
    J Exp Zool B Mol Dev Evol; 2011 Nov; 316(7):500-14. PubMed ID: 21695780
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Using RAMPAGE to Identify and Annotate Promoters in Insect Genomes.
    Raborn RT; Brendel VP
    Methods Mol Biol; 2019; 1858():99-116. PubMed ID: 30414114
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Transcriptome architecture of the three main lineages of agrobacteria.
    Waldburger L; Thompson MG; Weisberg AJ; Lee N; Chang JH; Keasling JD; Shih PM
    mSystems; 2023 Aug; 8(4):e0033323. PubMed ID: 37477440
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome wide transcription start sites analysis of Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.
    Alkhateeb RS; Vorhölter FJ; Rückert C; Mentz A; Wibberg D; Hublik G; Niehaus K; Pühler A
    J Biotechnol; 2016 May; 225():18-28. PubMed ID: 26975844
    [TBL] [Abstract][Full Text] [Related]  

  • 19. TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens.
    Prados J; Linder P; Redder P
    BMC Genomics; 2016 Nov; 17(1):849. PubMed ID: 27806702
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide analysis of core promoter structures in Schizosaccharomyces pombe with DeepCAGE.
    Li H; Hou J; Bai L; Hu C; Tong P; Kang Y; Zhao X; Shao Z
    RNA Biol; 2015; 12(5):525-37. PubMed ID: 25747261
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.