These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 26258935)

  • 1. A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data.
    Duan J; Wan M; Deng HW; Wang YP
    IEEE Trans Biomed Eng; 2016 Mar; 63(3):496-505. PubMed ID: 26258935
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification of copy number variants from exome sequence data.
    Samarakoon PS; Sorte HS; Kristiansen BE; Skodje T; Sheng Y; Tjønnfjord GE; Stadheim B; Stray-Pedersen A; Rødningen OK; Lyle R
    BMC Genomics; 2014 Aug; 15(1):661. PubMed ID: 25102989
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exome sequence read depth methods for identifying copy number changes.
    Kadalayil L; Rafiq S; Rose-Zerilli MJ; Pengelly RJ; Parker H; Oscier D; Strefford JC; Tapper WJ; Gibson J; Ennis S; Collins A
    Brief Bioinform; 2015 May; 16(3):380-92. PubMed ID: 25169955
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
    Nam JY; Kim NK; Kim SC; Joung JG; Xi R; Lee S; Park PJ; Park WY
    Brief Bioinform; 2016 Mar; 17(2):185-92. PubMed ID: 26210357
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Copy number variation detection and genotyping from exome sequence data.
    Krumm N; Sudmant PH; Ko A; O'Roak BJ; Malig M; Coe BP; ; Quinlan AR; Nickerson DA; Eichler EE
    Genome Res; 2012 Aug; 22(8):1525-32. PubMed ID: 22585873
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessing the reproducibility of exome copy number variations predictions.
    Hong CS; Singh LN; Mullikin JC; Biesecker LG
    Genome Med; 2016 Aug; 8(1):82. PubMed ID: 27503473
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An evaluation of copy number variation detection tools from whole-exome sequencing data.
    Tan R; Wang Y; Kleinstein SE; Liu Y; Zhu X; Guo H; Jiang Q; Allen AS; Zhu M
    Hum Mutat; 2014 Jul; 35(7):899-907. PubMed ID: 24599517
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Outlier-based identification of copy number variations using targeted resequencing in a small cohort of patients with Tetralogy of Fallot.
    Bansal V; Dorn C; Grunert M; Klaassen S; Hetzer R; Berger F; Sperling SR
    PLoS One; 2014; 9(1):e85375. PubMed ID: 24400131
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assessing copy number from exome sequencing and exome array CGH based on CNV spectrum in a large clinical cohort.
    Retterer K; Scuffins J; Schmidt D; Lewis R; Pineda-Alvarez D; Stafford A; Schmidt L; Warren S; Gibellini F; Kondakova A; Blair A; Bale S; Matyakhina L; Meck J; Aradhya S; Haverfield E
    Genet Med; 2015 Aug; 17(8):623-9. PubMed ID: 25356966
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data.
    Gao J; Wan C; Zhang H; Li A; Zang Q; Ban R; Ali A; Yu Z; Shi Q; Jiang X; Zhang Y
    BMC Bioinformatics; 2017 Oct; 18(1):436. PubMed ID: 28974218
    [TBL] [Abstract][Full Text] [Related]  

  • 11. EXCAVATOR: detecting copy number variants from whole-exome sequencing data.
    Magi A; Tattini L; Cifola I; D'Aurizio R; Benelli M; Mangano E; Battaglia C; Bonora E; Kurg A; Seri M; Magini P; Giusti B; Romeo G; Pippucci T; De Bellis G; Abbate R; Gensini GF
    Genome Biol; 2013; 14(10):R120. PubMed ID: 24172663
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Detecting copy-number variations in whole-exome sequencing data using the eXome Hidden Markov Model: an 'exome-first' approach.
    Miyatake S; Koshimizu E; Fujita A; Fukai R; Imagawa E; Ohba C; Kuki I; Nukui M; Araki A; Makita Y; Ogata T; Nakashima M; Tsurusaki Y; Miyake N; Saitsu H; Matsumoto N
    J Hum Genet; 2015 Apr; 60(4):175-82. PubMed ID: 25608832
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
    Wang C; Evans JM; Bhagwate AV; Prodduturi N; Sarangi V; Middha M; Sicotte H; Vedell PT; Hart SN; Oliver GR; Kocher JP; Maurer MJ; Novak AJ; Slager SL; Cerhan JR; Asmann YW
    Bioinformatics; 2014 Sep; 30(18):2678-80. PubMed ID: 24876377
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A machine-learning approach for accurate detection of copy number variants from exome sequencing.
    Pounraja VK; Jayakar G; Jensen M; Kelkar N; Girirajan S
    Genome Res; 2019 Jul; 29(7):1134-1143. PubMed ID: 31171634
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
    Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
    BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Efficient detection of copy-number variations using exome data: Batch- and sex-based analyses.
    Uchiyama Y; Yamaguchi D; Iwama K; Miyatake S; Hamanaka K; Tsuchida N; Aoi H; Azuma Y; Itai T; Saida K; Fukuda H; Sekiguchi F; Sakaguchi T; Lei M; Ohori S; Sakamoto M; Kato M; Koike T; Takahashi Y; Tanda K; Hyodo Y; Honjo RS; Bertola DR; Kim CA; Goto M; Okazaki T; Yamada H; Maegaki Y; Osaka H; Ngu LH; Siew CG; Teik KW; Akasaka M; Doi H; Tanaka F; Goto T; Guo L; Ikegawa S; Haginoya K; Haniffa M; Hiraishi N; Hiraki Y; Ikemoto S; Daida A; Hamano SI; Miura M; Ishiyama A; Kawano O; Kondo A; Matsumoto H; Okamoto N; Okanishi T; Oyoshi Y; Takeshita E; Suzuki T; Ogawa Y; Handa H; Miyazono Y; Koshimizu E; Fujita A; Takata A; Miyake N; Mizuguchi T; Matsumoto N
    Hum Mutat; 2021 Jan; 42(1):50-65. PubMed ID: 33131168
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Exome copy number variation detection: Use of a pool of unrelated healthy tissue as reference sample.
    Wenric S; Sticca T; Caberg JH; Josse C; Fasquelle C; Herens C; Jamar M; Max S; Gothot A; Caers J; Bours V
    Genet Epidemiol; 2017 Jan; 41(1):35-40. PubMed ID: 27862228
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improving Copy Number Variant Detection from Sequencing Data with a Combination of Programs and a Predictive Model.
    Välipakka S; Savarese M; Sagath L; Arumilli M; Giugliano T; Udd B; Hackman P
    J Mol Diagn; 2020 Jan; 22(1):40-49. PubMed ID: 31733349
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SILO: A Computational Method for Detecting Copy Number Gain in Clinical Specimens Analyzed on a Next-Generation Sequencing Platform.
    Miller N; Bouma M; Sabatini L; Gulukota K
    J Mol Diagn; 2021 Oct; 23(10):1241-1248. PubMed ID: 34365010
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accurate in silico confirmation of rare copy number variant calls from exome sequencing data using transfer learning.
    Tan R; Shen Y
    Nucleic Acids Res; 2022 Nov; 50(21):e123. PubMed ID: 36124672
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.