156 related articles for article (PubMed ID: 26279687)
1. MassCascade: Visual Programming for LC-MS Data Processing in Metabolomics.
Beisken S; Earll M; Portwood D; Seymour M; Steinbeck C
Mol Inform; 2014 Apr; 33(4):307-310. PubMed ID: 26279687
[TBL] [Abstract][Full Text] [Related]
2. Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.
Aiche S; Sachsenberg T; Kenar E; Walzer M; Wiswedel B; Kristl T; Boyles M; Duschl A; Huber CG; Berthold MR; Reinert K; Kohlbacher O
Proteomics; 2015 Apr; 15(8):1443-7. PubMed ID: 25604327
[TBL] [Abstract][Full Text] [Related]
3. KNIME-CDK: Workflow-driven cheminformatics.
Beisken S; Meinl T; Wiswedel B; de Figueiredo LF; Berthold M; Steinbeck C
BMC Bioinformatics; 2013 Aug; 14():257. PubMed ID: 24103053
[TBL] [Abstract][Full Text] [Related]
4. Integration of the ImageJ Ecosystem in the KNIME Analytics Platform.
Dietz C; Rueden CT; Helfrich S; Dobson ETA; Horn M; Eglinger J; Evans EL; McLean DT; Novitskaya T; Ricke WA; Sherer NM; Zijlstra A; Berthold MR; Eliceiri KW
Front Comput Sci; 2020 Mar; 2():. PubMed ID: 32905440
[TBL] [Abstract][Full Text] [Related]
5. Development and application of a data processing method for food metabolomics analysis.
Lei Y; Chen X; Shi J; Liu Y; Xu YJ
Mol Omics; 2023 Jul; 19(6):464-472. PubMed ID: 37139637
[TBL] [Abstract][Full Text] [Related]
6. TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics data.
Junker J; Bielow C; Bertsch A; Sturm M; Reinert K; Kohlbacher O
J Proteome Res; 2012 Jul; 11(7):3914-20. PubMed ID: 22583024
[TBL] [Abstract][Full Text] [Related]
7. An Automated Workflow Composition System for Liquid Chromatography-Mass Spectrometry Metabolomics Data Processing.
Du X; Dastmalchi F; Diller MA; Brochhausen M; Garrett TJ; Hogan WR; Lemas DJ
J Am Soc Mass Spectrom; 2023 Dec; 34(12):2857-2863. PubMed ID: 37874901
[TBL] [Abstract][Full Text] [Related]
8. KniMet: a pipeline for the processing of chromatography-mass spectrometry metabolomics data.
Liggi S; Hinz C; Hall Z; Santoru ML; Poddighe S; Fjeldsted J; Atzori L; Griffin JL
Metabolomics; 2018; 14(4):52. PubMed ID: 29576760
[TBL] [Abstract][Full Text] [Related]
9. BeerMIMS: Exploring the Use of Membrane-Inlet Mass Spectrometry (MIMS) Coupled to KNIME for the Characterization of Danish Beers.
Hughes SS; Nielsen MMK; Jonsbo RV; Nielsen CU; Lauritsen FR; Prabhala BK
Eur J Mass Spectrom (Chichester); 2021 Dec; 27(6):266-271. PubMed ID: 34989272
[TBL] [Abstract][Full Text] [Related]
10. Automated Comparative Metabolite Profiling of Large LC-ESIMS Data Sets in an ACD/MS Workbook Suite Add-in, and Data Clustering on a New Open-Source Web Platform FreeClust.
Božičević A; Dobrzyński M; De Bie H; Gafner F; Garo E; Hamburger M
Anal Chem; 2017 Dec; 89(23):12682-12689. PubMed ID: 29087694
[TBL] [Abstract][Full Text] [Related]
11. BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics.
Avtonomov DM; Raskind A; Nesvizhskii AI
J Proteome Res; 2016 Aug; 15(8):2500-9. PubMed ID: 27306858
[TBL] [Abstract][Full Text] [Related]
12. KNIME for Open-Source Bioimage Analysis: A Tutorial.
Dietz C; Berthold MR
Adv Anat Embryol Cell Biol; 2016; 219():179-97. PubMed ID: 27207367
[TBL] [Abstract][Full Text] [Related]
13. Untangling the Complexities of Processing and Analysis for Untargeted LC-MS Data Using Open-Source Tools.
Parker EJ; Billane KC; Austen N; Cotton A; George RM; Hopkins D; Lake JA; Pitman JK; Prout JN; Walker HJ; Williams A; Cameron DD
Metabolites; 2023 Mar; 13(4):. PubMed ID: 37110122
[TBL] [Abstract][Full Text] [Related]
14. Extending KNIME for next-generation sequencing data analysis.
Jagla B; Wiswedel B; Coppée JY
Bioinformatics; 2011 Oct; 27(20):2907-9. PubMed ID: 21873641
[TBL] [Abstract][Full Text] [Related]
15. El-MAVEN: A Fast, Robust, and User-Friendly Mass Spectrometry Data Processing Engine for Metabolomics.
Agrawal S; Kumar S; Sehgal R; George S; Gupta R; Poddar S; Jha A; Pathak S
Methods Mol Biol; 2019; 1978():301-321. PubMed ID: 31119671
[TBL] [Abstract][Full Text] [Related]
16. SLAW: A Scalable and Self-Optimizing Processing Workflow for Untargeted LC-MS.
Delabriere A; Warmer P; Brennsteiner V; Zamboni N
Anal Chem; 2021 Nov; 93(45):15024-15032. PubMed ID: 34735114
[TBL] [Abstract][Full Text] [Related]
17. Metabolomics Data Preprocessing Using ADAP and MZmine 2.
Du X; Smirnov A; Pluskal T; Jia W; Sumner S
Methods Mol Biol; 2020; 2104():25-48. PubMed ID: 31953811
[TBL] [Abstract][Full Text] [Related]
18. A new set of KNIME nodes implementing the QPhAR algorithm.
Kohlbacher SM; Ibis G; Permann C; Bryant S; Langer T; Seidel T
Mol Inform; 2023 May; 42(5):e2200245. PubMed ID: 36872297
[TBL] [Abstract][Full Text] [Related]
19. ADAP-GC 3.2: Graphical Software Tool for Efficient Spectral Deconvolution of Gas Chromatography-High-Resolution Mass Spectrometry Metabolomics Data.
Smirnov A; Jia W; Walker DI; Jones DP; Du X
J Proteome Res; 2018 Jan; 17(1):470-478. PubMed ID: 29076734
[TBL] [Abstract][Full Text] [Related]
20. Comparison of Three Untargeted Data Processing Workflows for Evaluating LC-HRMS Metabolomics Data.
Hemmer S; Manier SK; Fischmann S; Westphal F; Wagmann L; Meyer MR
Metabolites; 2020 Sep; 10(9):. PubMed ID: 32967365
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]