These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

417 related articles for article (PubMed ID: 26306699)

  • 41. TSVdb: a web-tool for TCGA splicing variants analysis.
    Sun W; Duan T; Ye P; Chen K; Zhang G; Lai M; Zhang H
    BMC Genomics; 2018 May; 19(1):405. PubMed ID: 29843604
    [TBL] [Abstract][Full Text] [Related]  

  • 42. MethSurv: a web tool to perform multivariable survival analysis using DNA methylation data.
    Modhukur V; Iljasenko T; Metsalu T; Lokk K; Laisk-Podar T; Vilo J
    Epigenomics; 2018 Mar; 10(3):277-288. PubMed ID: 29264942
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Bioinformatics software for biologists in the genomics era.
    Kumar S; Dudley J
    Bioinformatics; 2007 Jul; 23(14):1713-7. PubMed ID: 17485425
    [TBL] [Abstract][Full Text] [Related]  

  • 44. TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.
    Colaprico A; Silva TC; Olsen C; Garofano L; Cava C; Garolini D; Sabedot TS; Malta TM; Pagnotta SM; Castiglioni I; Ceccarelli M; Bontempi G; Noushmehr H
    Nucleic Acids Res; 2016 May; 44(8):e71. PubMed ID: 26704973
    [TBL] [Abstract][Full Text] [Related]  

  • 45. BEclear: Batch Effect Detection and Adjustment in DNA Methylation Data.
    Akulenko R; Merl M; Helms V
    PLoS One; 2016; 11(8):e0159921. PubMed ID: 27559732
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Goldmine integrates information placing genomic ranges into meaningful biological contexts.
    Bhasin JM; Ting AH
    Nucleic Acids Res; 2016 Jul; 44(12):5550-6. PubMed ID: 27257071
    [TBL] [Abstract][Full Text] [Related]  

  • 47. FORG3D: force-directed 3D graph editor for visualization of integrated genome scale data.
    Paananen J; Wong G
    BMC Syst Biol; 2009 Feb; 3():26. PubMed ID: 19239683
    [TBL] [Abstract][Full Text] [Related]  

  • 48. TCGA2STAT: simple TCGA data access for integrated statistical analysis in R.
    Wan YW; Allen GI; Liu Z
    Bioinformatics; 2016 Mar; 32(6):952-4. PubMed ID: 26568634
    [TBL] [Abstract][Full Text] [Related]  

  • 49. The Gene Set Builder: collation, curation, and distribution of sets of genes.
    Yusuf D; Lim JS; Wasserman WW
    BMC Bioinformatics; 2005 Dec; 6():305. PubMed ID: 16371163
    [TBL] [Abstract][Full Text] [Related]  

  • 50. MIRAGAA--a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer.
    Gaire RK; Bailey J; Bearfoot J; Campbell IG; Stuckey PJ; Haviv I
    Bioinformatics; 2010 Jan; 26(2):161-7. PubMed ID: 19933823
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content.
    Kling T; Johansson P; Sanchez J; Marinescu VD; Jörnsten R; Nelander S
    Nucleic Acids Res; 2015 Sep; 43(15):e98. PubMed ID: 25953855
    [TBL] [Abstract][Full Text] [Related]  

  • 52. PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets.
    Netanely D; Stern N; Laufer I; Shamir R
    BMC Bioinformatics; 2019 Dec; 20(1):732. PubMed ID: 31878868
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Accessible Pipeline for Translational Research Using TCGA: Examples of Relating Gene Mechanism to Disease-Specific Outcomes.
    Berglund AE; Putney RM; Creed JH; Aden-Buie G; Gerke TA; Rounbehler RJ
    Methods Mol Biol; 2021; 2194():127-142. PubMed ID: 32926365
    [TBL] [Abstract][Full Text] [Related]  

  • 54. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.
    Wei L; Jin Z; Yang S; Xu Y; Zhu Y; Ji Y
    Bioinformatics; 2018 May; 34(9):1615-1617. PubMed ID: 29272348
    [TBL] [Abstract][Full Text] [Related]  

  • 55. SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles.
    Lopez D; Montoya D; Ambrose M; Lam L; Briscoe L; Adams C; Modlin RL; Pellegrini M
    BMC Genomics; 2017 Oct; 18(1):824. PubMed ID: 29070035
    [TBL] [Abstract][Full Text] [Related]  

  • 56. New tools for Mendelian disease gene identification: PhenoDB variant analysis module; and GeneMatcher, a web-based tool for linking investigators with an interest in the same gene.
    Sobreira N; Schiettecatte F; Boehm C; Valle D; Hamosh A
    Hum Mutat; 2015 Apr; 36(4):425-31. PubMed ID: 25684268
    [TBL] [Abstract][Full Text] [Related]  

  • 57. An integrated workflow for DNA methylation analysis.
    Li P; Demirci F; Mahalingam G; Demirci C; Nakano M; Meyers BC
    J Genet Genomics; 2013 May; 40(5):249-60. PubMed ID: 23706300
    [TBL] [Abstract][Full Text] [Related]  

  • 58. QMachine: commodity supercomputing in web browsers.
    Wilkinson SR; Almeida JS
    BMC Bioinformatics; 2014 Jun; 15():176. PubMed ID: 24913605
    [TBL] [Abstract][Full Text] [Related]  

  • 59. TIP: A Web Server for Resolving Tumor Immunophenotype Profiling.
    Xu L; Deng C; Pang B; Zhang X; Liu W; Liao G; Yuan H; Cheng P; Li F; Long Z; Yan M; Zhao T; Xiao Y; Li X
    Cancer Res; 2018 Dec; 78(23):6575-6580. PubMed ID: 30154154
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data.
    Zhu Y; Xu Y; Helseth DL; Gulukota K; Yang S; Pesce LL; Mitra R; Müller P; Sengupta S; Guo W; Silverstein JC; Foster I; Parsad N; White KP; Ji Y
    J Natl Cancer Inst; 2015 Aug; 107(8):. PubMed ID: 25956356
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 21.