157 related articles for article (PubMed ID: 26311067)
1. A simple procedure for directly obtaining haplotype sequences of diploid genomes.
Noyes HA; Daly D; Goodhead I; Kay S; Kemp SJ; Kenny J; Saccheri I; Schnabel RD; Taylor JF; Hall N
BMC Genomics; 2015 Aug; 16(1):642. PubMed ID: 26311067
[TBL] [Abstract][Full Text] [Related]
2. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
[TBL] [Abstract][Full Text] [Related]
3. phasebook: haplotype-aware de novo assembly of diploid genomes from long reads.
Luo X; Kang X; Schönhuth A
Genome Biol; 2021 Oct; 22(1):299. PubMed ID: 34706745
[TBL] [Abstract][Full Text] [Related]
4. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Roach MJ; Schmidt SA; Borneman AR
BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
[TBL] [Abstract][Full Text] [Related]
5. Assembly and diploid architecture of an individual human genome via single-molecule technologies.
Pendleton M; Sebra R; Pang AW; Ummat A; Franzen O; Rausch T; Stütz AM; Stedman W; Anantharaman T; Hastie A; Dai H; Fritz MH; Cao H; Cohain A; Deikus G; Durrett RE; Blanchard SC; Altman R; Chin CS; Guo Y; Paxinos EE; Korbel JO; Darnell RB; McCombie WR; Kwok PY; Mason CE; Schadt EE; Bashir A
Nat Methods; 2015 Aug; 12(8):780-6. PubMed ID: 26121404
[TBL] [Abstract][Full Text] [Related]
6. Computational methods for chromosome-scale haplotype reconstruction.
Garg S
Genome Biol; 2021 Apr; 22(1):101. PubMed ID: 33845884
[TBL] [Abstract][Full Text] [Related]
7. A comparative analysis of methods for de novo assembly of hymenopteran genomes using either haploid or diploid samples.
Yahav T; Privman E
Sci Rep; 2019 Apr; 9(1):6480. PubMed ID: 31019201
[TBL] [Abstract][Full Text] [Related]
8. A graph-based approach to diploid genome assembly.
Garg S; Rautiainen M; Novak AM; Garrison E; Durbin R; Marschall T
Bioinformatics; 2018 Jul; 34(13):i105-i114. PubMed ID: 29949989
[TBL] [Abstract][Full Text] [Related]
9. Whole-genome haplotyping by dilution, amplification, and sequencing.
Kaper F; Swamy S; Klotzle B; Munchel S; Cottrell J; Bibikova M; Chuang HY; Kruglyak S; Ronaghi M; Eberle MA; Fan JB
Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5552-7. PubMed ID: 23509297
[TBL] [Abstract][Full Text] [Related]
10. Dense and accurate whole-chromosome haplotyping of individual genomes.
Porubsky D; Garg S; Sanders AD; Korbel JO; Guryev V; Lansdorp PM; Marschall T
Nat Commun; 2017 Nov; 8(1):1293. PubMed ID: 29101320
[TBL] [Abstract][Full Text] [Related]
11. Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
Campoy JA; Sun H; Goel M; Jiao WB; Folz-Donahue K; Wang N; Rubio M; Liu C; Kukat C; Ruiz D; Huettel B; Schneeberger K
Genome Biol; 2020 Dec; 21(1):306. PubMed ID: 33372615
[TBL] [Abstract][Full Text] [Related]
12. De novo assembly of a haplotype-resolved human genome.
Cao H; Wu H; Luo R; Huang S; Sun Y; Tong X; Xie Y; Liu B; Yang H; Zheng H; Li J; Li B; Wang Y; Yang F; Sun P; Liu S; Gao P; Huang H; Sun J; Chen D; He G; Huang W; Huang Z; Li Y; Tellier LC; Liu X; Feng Q; Xu X; Zhang X; Bolund L; Krogh A; Kristiansen K; Drmanac R; Drmanac S; Nielsen R; Li S; Wang J; Yang H; Li Y; Wong GK; Wang J
Nat Biotechnol; 2015 Jun; 33(6):617-22. PubMed ID: 26006006
[TBL] [Abstract][Full Text] [Related]
13. Heterozygous genome assembly via binary classification of homologous sequence.
Bodily PM; Fujimoto M; Ortega C; Okuda N; Price JC; Clement MJ; Snell Q
BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S5. PubMed ID: 25952609
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome.
Masood D; Ren L; Nguyen C; Brundu FG; Zheng L; Zhao Y; Jaeger E; Li Y; Cha SW; Halpern A; Truong S; Virata M; Yan C; Chen Q; Pang A; Alberto R; Xiao C; Yang Z; Chen W; Wang C; Cross F; Catreux S; Shi L; Beaver JA; Xiao W; Meerzaman DM
Genome Biol; 2024 Jun; 25(1):163. PubMed ID: 38902799
[TBL] [Abstract][Full Text] [Related]
15. Direct determination of diploid genome sequences.
Weisenfeld NI; Kumar V; Shah P; Church DM; Jaffe DB
Genome Res; 2017 May; 27(5):757-767. PubMed ID: 28381613
[TBL] [Abstract][Full Text] [Related]
16. Haplotype phasing in single-cell DNA-sequencing data.
Satas G; Raphael BJ
Bioinformatics; 2018 Jul; 34(13):i211-i217. PubMed ID: 29950014
[TBL] [Abstract][Full Text] [Related]
17. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
Huang S; Kang M; Xu A
Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147
[TBL] [Abstract][Full Text] [Related]
18. dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
Safonova Y; Bankevich A; Pevzner PA
J Comput Biol; 2015 Jun; 22(6):528-45. PubMed ID: 25734602
[TBL] [Abstract][Full Text] [Related]
19. The diploid genome sequence of an individual human.
Levy S; Sutton G; Ng PC; Feuk L; Halpern AL; Walenz BP; Axelrod N; Huang J; Kirkness EF; Denisov G; Lin Y; MacDonald JR; Pang AW; Shago M; Stockwell TB; Tsiamouri A; Bafna V; Bansal V; Kravitz SA; Busam DA; Beeson KY; McIntosh TC; Remington KA; Abril JF; Gill J; Borman J; Rogers YH; Frazier ME; Scherer SW; Strausberg RL; Venter JC
PLoS Biol; 2007 Sep; 5(10):e254. PubMed ID: 17803354
[TBL] [Abstract][Full Text] [Related]
20. A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing.
Ting CK; Lin CS; Chan MT; Chen JW; Chuang SY; Huang YT
PLoS One; 2016; 11(11):e0166721. PubMed ID: 27861560
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
