352 related articles for article (PubMed ID: 26313521)
1. Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution.
Sahlén P; Abdullayev I; Ramsköld D; Matskova L; Rilakovic N; Lötstedt B; Albert TJ; Lundeberg J; Sandberg R
Genome Biol; 2015 Aug; 16(1):156. PubMed ID: 26313521
[TBL] [Abstract][Full Text] [Related]
2. A predictive modeling approach for cell line-specific long-range regulatory interactions.
Roy S; Siahpirani AF; Chasman D; Knaack S; Ay F; Stewart R; Wilson M; Sridharan R
Nucleic Acids Res; 2015 Oct; 43(18):8694-712. PubMed ID: 26338778
[TBL] [Abstract][Full Text] [Related]
3. OCEAN-C: mapping hubs of open chromatin interactions across the genome reveals gene regulatory networks.
Li T; Jia L; Cao Y; Chen Q; Li C
Genome Biol; 2018 Apr; 19(1):54. PubMed ID: 29690904
[TBL] [Abstract][Full Text] [Related]
4. Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases.
Lu L; Liu X; Huang WK; Giusti-Rodríguez P; Cui J; Zhang S; Xu W; Wen Z; Ma S; Rosen JD; Xu Z; Bartels CF; Kawaguchi R; Hu M; Scacheri PC; Rong Z; Li Y; Sullivan PF; Song H; Ming GL; Li Y; Jin F
Mol Cell; 2020 Aug; 79(3):521-534.e15. PubMed ID: 32592681
[TBL] [Abstract][Full Text] [Related]
5. Assessment of 3D Interactions Between Promoters and Distal Regulatory Elements with Promoter Capture Hi-C (PCHi-C).
Karasu N; Sexton T
Methods Mol Biol; 2021; 2351():229-248. PubMed ID: 34382193
[TBL] [Abstract][Full Text] [Related]
6. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.
Schoenfelder S; Furlan-Magaril M; Mifsud B; Tavares-Cadete F; Sugar R; Javierre BM; Nagano T; Katsman Y; Sakthidevi M; Wingett SW; Dimitrova E; Dimond A; Edelman LB; Elderkin S; Tabbada K; Darbo E; Andrews S; Herman B; Higgs A; LeProust E; Osborne CS; Mitchell JA; Luscombe NM; Fraser P
Genome Res; 2015 Apr; 25(4):582-97. PubMed ID: 25752748
[TBL] [Abstract][Full Text] [Related]
7. Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
Zhang Y; Wong CH; Birnbaum RY; Li G; Favaro R; Ngan CY; Lim J; Tai E; Poh HM; Wong E; Mulawadi FH; Sung WK; Nicolis S; Ahituv N; Ruan Y; Wei CL
Nature; 2013 Dec; 504(7479):306-310. PubMed ID: 24213634
[TBL] [Abstract][Full Text] [Related]
8. HiCoP, a simple and robust method for detecting interactions of regulatory regions.
Zhang Y; Li Z; Bian S; Zhao H; Feng D; Chen Y; Hou Y; Liu Q; Hao B
Epigenetics Chromatin; 2020 Jul; 13(1):27. PubMed ID: 32611439
[TBL] [Abstract][Full Text] [Related]
9. Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions.
Schoenfelder S; Javierre BM; Furlan-Magaril M; Wingett SW; Fraser P
J Vis Exp; 2018 Jun; (136):. PubMed ID: 30010637
[TBL] [Abstract][Full Text] [Related]
10. Targeted Chromosome Conformation Capture (HiCap).
Zhigulev A; Sahlén P
Methods Mol Biol; 2022; 2532():75-94. PubMed ID: 35867246
[TBL] [Abstract][Full Text] [Related]
11. Bridging between Mouse and Human Enhancer-Promoter Long-Range Interactions in Neural Stem Cells, to Understand Enhancer Function in Neurodevelopmental Disease.
D'Aurizio R; Catona O; Pitasi M; Li YE; Ren B; Nicolis SK
Int J Mol Sci; 2022 Jul; 23(14):. PubMed ID: 35887306
[TBL] [Abstract][Full Text] [Related]
12. HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test.
Lagler TM; Abnousi A; Hu M; Yang Y; Li Y
Am J Hum Genet; 2021 Feb; 108(2):257-268. PubMed ID: 33545029
[TBL] [Abstract][Full Text] [Related]
13. High resolution mapping of enhancer-promoter interactions.
Reeder C; Closser M; Poh HM; Sandhu K; Wichterle H; Gifford D
PLoS One; 2015; 10(5):e0122420. PubMed ID: 25970635
[TBL] [Abstract][Full Text] [Related]
14. Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C.
Lee BH; Wu Z; Rhie SK
Epigenetics Chromatin; 2022 Dec; 15(1):41. PubMed ID: 36544209
[TBL] [Abstract][Full Text] [Related]
15. Functional genomic assays to annotate enhancer-promoter interactions genome wide.
Leung AK; Yao L; Yu H
Hum Mol Genet; 2022 Oct; 31(R1):R97-R104. PubMed ID: 36018818
[TBL] [Abstract][Full Text] [Related]
16. Multiscale 3D Genome Rewiring during Mouse Neural Development.
Bonev B; Mendelson Cohen N; Szabo Q; Fritsch L; Papadopoulos GL; Lubling Y; Xu X; Lv X; Hugnot JP; Tanay A; Cavalli G
Cell; 2017 Oct; 171(3):557-572.e24. PubMed ID: 29053968
[TBL] [Abstract][Full Text] [Related]
17. Analysis of gene expression in mouse preimplantation embryos demonstrates that the primary role of enhancers is to relieve repression of promoters.
Majumder S; Miranda M; DePamphilis ML
EMBO J; 1993 Mar; 12(3):1131-40. PubMed ID: 8458327
[TBL] [Abstract][Full Text] [Related]
18. Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
Cubeñas-Potts C; Rowley MJ; Lyu X; Li G; Lei EP; Corces VG
Nucleic Acids Res; 2017 Feb; 45(4):1714-1730. PubMed ID: 27899590
[TBL] [Abstract][Full Text] [Related]
19. Enhancer dependence of cell-type-specific gene expression increases with developmental age.
Cai W; Huang J; Zhu Q; Li BE; Seruggia D; Zhou P; Nguyen M; Fujiwara Y; Xie H; Yang Z; Hong D; Ren P; Xu J; Pu WT; Yuan GC; Orkin SH
Proc Natl Acad Sci U S A; 2020 Sep; 117(35):21450-21458. PubMed ID: 32817427
[TBL] [Abstract][Full Text] [Related]
20. Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.
Yaragatti M; Basilico C; Dailey L
Genome Res; 2008 Jun; 18(6):930-8. PubMed ID: 18441229
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
