242 related articles for article (PubMed ID: 26315903)
1. Bayexer: an accurate and fast Bayesian demultiplexer for Illumina sequences.
Yi H; Li Z; Li T; Zhao J
Bioinformatics; 2015 Dec; 31(24):4000-2. PubMed ID: 26315903
[TBL] [Abstract][Full Text] [Related]
2. BFC: correcting Illumina sequencing errors.
Li H
Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
[TBL] [Abstract][Full Text] [Related]
3. deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.
Renaud G; Stenzel U; Maricic T; Wiebe V; Kelso J
Bioinformatics; 2015 Mar; 31(5):770-2. PubMed ID: 25359895
[TBL] [Abstract][Full Text] [Related]
4. Axe: rapid, competitive sequence read demultiplexing using a trie.
Murray KD; Borevitz JO
Bioinformatics; 2018 Nov; 34(22):3924-3925. PubMed ID: 29868827
[TBL] [Abstract][Full Text] [Related]
5. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
6. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
[TBL] [Abstract][Full Text] [Related]
7. AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.
Criscuolo A; Brisse S
Genomics; 2013; 102(5-6):500-6. PubMed ID: 23912058
[TBL] [Abstract][Full Text] [Related]
8. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
Chandak S; Tatwawadi K; Weissman T
Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
[TBL] [Abstract][Full Text] [Related]
9. ACE: accurate correction of errors using K-mer tries.
Sheikhizadeh S; de Ridder D
Bioinformatics; 2015 Oct; 31(19):3216-8. PubMed ID: 26026137
[TBL] [Abstract][Full Text] [Related]
10. AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework.
Zheng Q; Grice EA
PLoS Comput Biol; 2016 Oct; 12(10):e1005096. PubMed ID: 27706155
[TBL] [Abstract][Full Text] [Related]
11. LiveKraken--real-time metagenomic classification of illumina data.
Tausch SH; Strauch B; Andrusch A; Loka TP; Lindner MS; Nitsche A; Renard BY
Bioinformatics; 2018 Nov; 34(21):3750-3752. PubMed ID: 29868852
[TBL] [Abstract][Full Text] [Related]
12. Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K; Echchiki A; Roux J; Šikic M
Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
[TBL] [Abstract][Full Text] [Related]
13. FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads.
Pajuste FD; Kaplinski L; Möls M; Puurand T; Lepamets M; Remm M
Sci Rep; 2017 May; 7(1):2537. PubMed ID: 28566690
[TBL] [Abstract][Full Text] [Related]
14. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
Tárraga J; Arnau V; Martínez H; Moreno R; Cazorla D; Salavert-Torres J; Blanquer-Espert I; Dopazo J; Medina I
Bioinformatics; 2014 Dec; 30(23):3396-8. PubMed ID: 25143289
[TBL] [Abstract][Full Text] [Related]
15. NxTrim: optimized trimming of Illumina mate pair reads.
O'Connell J; Schulz-Trieglaff O; Carlson E; Hims MM; Gormley NA; Cox AJ
Bioinformatics; 2015 Jun; 31(12):2035-7. PubMed ID: 25661542
[TBL] [Abstract][Full Text] [Related]
16. Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.
Thomas N; Heather J; Ndifon W; Shawe-Taylor J; Chain B
Bioinformatics; 2013 Mar; 29(5):542-50. PubMed ID: 23303508
[TBL] [Abstract][Full Text] [Related]
17. Minimap2: pairwise alignment for nucleotide sequences.
Li H
Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
[TBL] [Abstract][Full Text] [Related]
18. pIRS: Profile-based Illumina pair-end reads simulator.
Hu X; Yuan J; Shi Y; Lu J; Liu B; Li Z; Chen Y; Mu D; Zhang H; Li N; Yue Z; Bai F; Li H; Fan W
Bioinformatics; 2012 Jun; 28(11):1533-5. PubMed ID: 22508794
[TBL] [Abstract][Full Text] [Related]
19. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Wick RR; Judd LM; Gorrie CL; Holt KE
PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
[TBL] [Abstract][Full Text] [Related]
20. leeHom: adaptor trimming and merging for Illumina sequencing reads.
Renaud G; Stenzel U; Kelso J
Nucleic Acids Res; 2014 Oct; 42(18):e141. PubMed ID: 25100869
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]