These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 26315904)

  • 21. PDBSite: a database of the 3D structure of protein functional sites.
    Ivanisenko VA; Pintus SS; Grigorovich DA; Kolchanov NA
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D183-7. PubMed ID: 15608173
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Fragment-Based Ligand-Protein Contact Statistics: Application to Docking Simulations.
    Macari G; Toti D; Del Moro C; Polticelli F
    Int J Mol Sci; 2019 May; 20(10):. PubMed ID: 31117183
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Methods for predicting protein-ligand binding sites.
    Xie ZR; Hwang MJ
    Methods Mol Biol; 2015; 1215():383-98. PubMed ID: 25330972
    [TBL] [Abstract][Full Text] [Related]  

  • 24. DynaBiS: A hierarchical sampling algorithm to identify flexible binding sites for large ligands and peptides.
    Melse O; Hecht S; Antes I
    Proteins; 2022 Jan; 90(1):18-32. PubMed ID: 34288078
    [TBL] [Abstract][Full Text] [Related]  

  • 25. GASS: identifying enzyme active sites with genetic algorithms.
    Izidoro SC; de Melo-Minardi RC; Pappa GL
    Bioinformatics; 2015 Mar; 31(6):864-70. PubMed ID: 25388152
    [TBL] [Abstract][Full Text] [Related]  

  • 26. FireDB--a database of functionally important residues from proteins of known structure.
    Lopez G; Valencia A; Tress M
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D219-23. PubMed ID: 17132832
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Large-scale comparison of four binding site detection algorithms.
    Schmidtke P; Souaille C; Estienne F; Baurin N; Kroemer RT
    J Chem Inf Model; 2010 Dec; 50(12):2191-200. PubMed ID: 20828173
    [TBL] [Abstract][Full Text] [Related]  

  • 28. SuperSite: dictionary of metabolite and drug binding sites in proteins.
    Bauer RA; Günther S; Jansen D; Heeger C; Thaben PF; Preissner R
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D195-200. PubMed ID: 18842629
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Efficient docking of peptides to proteins without prior knowledge of the binding site.
    Hetényi C; van der Spoel D
    Protein Sci; 2002 Jul; 11(7):1729-37. PubMed ID: 12070326
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Detection of functionally important regions in "hypothetical proteins" of known structure.
    Nimrod G; Schushan M; Steinberg DM; Ben-Tal N
    Structure; 2008 Dec; 16(12):1755-63. PubMed ID: 19081051
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Automatic generation of bioinformatics tools for predicting protein-ligand binding sites.
    Komiyama Y; Banno M; Ueki K; Saad G; Shimizu K
    Bioinformatics; 2016 Mar; 32(6):901-7. PubMed ID: 26545824
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A method for localizing ligand binding pockets in protein structures.
    Glaser F; Morris RJ; Najmanovich RJ; Laskowski RA; Thornton JM
    Proteins; 2006 Feb; 62(2):479-88. PubMed ID: 16304646
    [TBL] [Abstract][Full Text] [Related]  

  • 33. JADOPPT: java based AutoDock preparing and processing tool.
    García-Pérez C; Peláez R; Therón R; Luis López-Pérez J
    Bioinformatics; 2017 Feb; 33(4):583-585. PubMed ID: 27797779
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Chemometric analysis of ligand receptor complementarity: identifying Complementary Ligands Based on Receptor Information (CoLiBRI).
    Oloff S; Zhang S; Sukumar N; Breneman C; Tropsha A
    J Chem Inf Model; 2006; 46(2):844-51. PubMed ID: 16563016
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The Art of Compiling Protein Binding Site Ensembles.
    Bietz S; Fährrolfes R; Rarey M
    Mol Inform; 2016 Dec; 35(11-12):593-598. PubMed ID: 27870245
    [TBL] [Abstract][Full Text] [Related]  

  • 36. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
    Kinoshita K; Murakami Y; Nakamura H
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W398-402. PubMed ID: 17567616
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Ligand Binding Site Comparison - LiBiSCo - a web-based tool for analyzing interactions between proteins and ligands to explore amino acid specificity within active sites.
    Hassan S; Töpel M; Aronsson H
    Proteins; 2021 Nov; 89(11):1530-1540. PubMed ID: 34240464
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction.
    Brylinski M
    J Chem Inf Model; 2013 Nov; 53(11):3097-112. PubMed ID: 24171431
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SIENA: Efficient Compilation of Selective Protein Binding Site Ensembles.
    Bietz S; Rarey M
    J Chem Inf Model; 2016 Jan; 56(1):248-59. PubMed ID: 26759067
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.