These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 26320390)

  • 1. Computing Reaction Pathways of Rare Biomolecular Transitions using Atomistic Force-Fields.
    Faccioli P; a Beccara S
    Biophys Chem; 2016 Jan; 208():62-7. PubMed ID: 26320390
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Variational scheme to compute protein reaction pathways using atomistic force fields with explicit solvent.
    A Beccara S; Fant L; Faccioli P
    Phys Rev Lett; 2015 Mar; 114(9):098103. PubMed ID: 25793854
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Self-consistent calculation of protein folding pathways.
    Orioli S; A Beccara S; Faccioli P
    J Chem Phys; 2017 Aug; 147(6):064108. PubMed ID: 28810783
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations.
    Faccioli P; Lonardi A; Orland H
    J Chem Phys; 2010 Jul; 133(4):045104. PubMed ID: 20687692
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Simple, yet powerful methodologies for conformational sampling of proteins.
    Harada R; Takano Y; Baba T; Shigeta Y
    Phys Chem Chem Phys; 2015 Mar; 17(9):6155-73. PubMed ID: 25659594
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA folding pathways from all-atom simulations with a variationally improved history-dependent bias.
    Lazzeri G; Micheletti C; Pasquali S; Faccioli P
    Biophys J; 2023 Aug; 122(15):3089-3098. PubMed ID: 37355771
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantitative protein dynamics from dominant folding pathways.
    Sega M; Faccioli P; Pederiva F; Garberoglio G; Orland H
    Phys Rev Lett; 2007 Sep; 99(11):118102. PubMed ID: 17930474
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Traversing the folding pathway of proteins using temperature-aided cascade molecular dynamics with conformation-dependent charges.
    Jani V; Sonavane U; Joshi R
    Eur Biophys J; 2016 Jul; 45(5):463-82. PubMed ID: 26872480
    [TBL] [Abstract][Full Text] [Related]  

  • 9. All-atom calculation of protein free-energy profiles.
    Orioli S; Ianeselli A; Spagnolli G; Faccioli P
    J Chem Phys; 2017 Oct; 147(15):152724. PubMed ID: 29055321
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Microscopically computing free-energy profiles and transition path time of rare macromolecular transitions.
    Faccioli P; Pederiva F
    Phys Rev E Stat Nonlin Soft Matter Phys; 2012 Dec; 86(6 Pt 1):061916. PubMed ID: 23367984
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Folding Mechanism of Proteins Im7 and Im9: Insight from All-Atom Simulations in Implicit and Explicit Solvent.
    Wang F; Cazzolli G; Wintrode P; Faccioli P
    J Phys Chem B; 2016 Sep; 120(35):9297-307. PubMed ID: 27532482
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Advances in free-energy-based simulations of protein folding and ligand binding.
    Perez A; Morrone JA; Simmerling C; Dill KA
    Curr Opin Struct Biol; 2016 Feb; 36():25-31. PubMed ID: 26773233
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Atomic-level characterization of the structural dynamics of proteins.
    Shaw DE; Maragakis P; Lindorff-Larsen K; Piana S; Dror RO; Eastwood MP; Bank JA; Jumper JM; Salmon JK; Shan Y; Wriggers W
    Science; 2010 Oct; 330(6002):341-6. PubMed ID: 20947758
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein folding pathways extracted by OFLOOD: Outlier FLOODing method.
    Harada R; Nakamura T; Takano Y; Shigeta Y
    J Comput Chem; 2015 Jan; 36(2):97-102. PubMed ID: 25363340
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Communication: Multiple atomistic force fields in a single enhanced sampling simulation.
    Hoang Viet M; Derreumaux P; Nguyen PH
    J Chem Phys; 2015 Jul; 143(2):021101. PubMed ID: 26178083
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dominant pathways in protein folding.
    Faccioli P; Sega M; Pederiva F; Orland H
    Phys Rev Lett; 2006 Sep; 97(10):108101. PubMed ID: 17025856
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Towards fast, rigorous and efficient conformational sampling of biomolecules: Advances in accelerated molecular dynamics.
    Doshi U; Hamelberg D
    Biochim Biophys Acta; 2015 May; 1850(5):878-888. PubMed ID: 25153688
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Some practical approaches to treating electrostatic polarization of proteins.
    Ji C; Mei Y
    Acc Chem Res; 2014 Sep; 47(9):2795-803. PubMed ID: 24883956
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Path-sampling strategies for simulating rare events in biomolecular systems.
    Chong LT; Saglam AS; Zuckerman DM
    Curr Opin Struct Biol; 2017 Apr; 43():88-94. PubMed ID: 27984811
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Frontiers in molecular dynamics simulations of DNA.
    Pérez A; Luque FJ; Orozco M
    Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.