BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

766 related articles for article (PubMed ID: 26330117)

  • 1. Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.
    Cho JY; Lee HJ; Jeong SK; Kim KY; Kwon KH; Yoo JS; Omenn GS; Baker MS; Hancock WS; Paik YK
    J Proteome Res; 2015 Dec; 14(12):4959-66. PubMed ID: 26330117
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification.
    Cho JY; Lee HJ; Jeong SK; Paik YK
    J Proteome Res; 2017 Dec; 16(12):4435-4445. PubMed ID: 28299940
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.
    Carapito C; Lane L; Benama M; Opsomer A; Mouton-Barbosa E; Garrigues L; Gonzalez de Peredo A; Burel A; Bruley C; Gateau A; Bouyssié D; Jaquinod M; Cianferani S; Burlet-Schiltz O; Van Dorsselaer A; Garin J; Vandenbrouck Y
    J Proteome Res; 2015 Sep; 14(9):3621-34. PubMed ID: 26132440
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Probing the Missing Human Proteome: A Computational Perspective.
    Kumar D; Jain A; Dash D
    J Proteome Res; 2015 Dec; 14(12):4949-58. PubMed ID: 26407240
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GenomewidePDB 2.0: A Newly Upgraded Versatile Proteogenomic Database for the Chromosome-Centric Human Proteome Project.
    Jeong SK; Hancock WS; Paik YK
    J Proteome Res; 2015 Sep; 14(9):3710-9. PubMed ID: 26272709
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Integrated Proteomic Pipeline Using Multiple Search Engines for a Proteogenomic Study with a Controlled Protein False Discovery Rate.
    Park GW; Hwang H; Kim KH; Lee JY; Lee HK; Park JY; Ji ES; Park SR; Yates JR; Kwon KH; Park YM; Lee HJ; Paik YK; Kim JY; Yoo JS
    J Proteome Res; 2016 Nov; 15(11):4082-4090. PubMed ID: 27537616
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project.
    Shiromizu T; Adachi J; Watanabe S; Murakami T; Kuga T; Muraoka S; Tomonaga T
    J Proteome Res; 2013 Jun; 12(6):2414-21. PubMed ID: 23312004
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification and Validation of Human Missing Proteins and Peptides in Public Proteome Databases: Data Mining Strategy.
    Elguoshy A; Hirao Y; Xu B; Saito S; Quadery AF; Yamamoto K; Mitsui T; Yamamoto T;
    J Proteome Res; 2017 Dec; 16(12):4403-4414. PubMed ID: 28980472
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A peptide-retrieval strategy enables significant improvement of quantitative performance without compromising confidence of identification.
    Tu C; Shen S; Sheng Q; Shyr Y; Qu J
    J Proteomics; 2017 Jan; 152():276-282. PubMed ID: 27903464
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches.
    Zhang Z; Burke M; Mirokhin YA; Tchekhovskoi DV; Markey SP; Yu W; Chaerkady R; Hess S; Stein SE
    J Proteome Res; 2018 Feb; 17(2):846-857. PubMed ID: 29281288
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Informatics View on the Challenges of Identifying Missing Proteins from Shotgun Proteomics.
    Choong WK; Chang HY; Chen CT; Tsai CF; Hsu WL; Chen YJ; Sung TY
    J Proteome Res; 2015 Dec; 14(12):5396-407. PubMed ID: 26549055
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries.
    Hu Y; Li Y; Lam H
    Proteomics; 2011 Dec; 11(24):4702-11. PubMed ID: 22038894
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Elucidation of cross-species proteomic effects in human and hominin bone proteome identification through a bioinformatics experiment.
    Welker F
    BMC Evol Biol; 2018 Feb; 18(1):23. PubMed ID: 29463217
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra.
    Shen J; Pagala VR; Breuer AM; Peng J; Bin Ma ; Wang X
    J Proteome Res; 2018 Sep; 17(9):3325-3331. PubMed ID: 30096983
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.
    Islam MT; Garg G; Hancock WS; Risk BA; Baker MS; Ranganathan S
    J Proteome Res; 2014 Jan; 13(1):76-83. PubMed ID: 24313344
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Spectrum-to-spectrum searching using a proteome-wide spectral library.
    Yen CY; Houel S; Ahn NG; Old WM
    Mol Cell Proteomics; 2011 Jul; 10(7):M111.007666. PubMed ID: 21532008
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project.
    Jumeau F; Com E; Lane L; Duek P; Lagarrigue M; Lavigne R; Guillot L; Rondel K; Gateau A; Melaine N; Guével B; Sergeant N; Mitchell V; Pineau C
    J Proteome Res; 2015 Sep; 14(9):3606-20. PubMed ID: 26168773
    [TBL] [Abstract][Full Text] [Related]  

  • 18. iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates.
    Shteynberg D; Deutsch EW; Lam H; Eng JK; Sun Z; Tasman N; Mendoza L; Moritz RL; Aebersold R; Nesvizhskii AI
    Mol Cell Proteomics; 2011 Dec; 10(12):M111.007690. PubMed ID: 21876204
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Functional annotation of the human chromosome 7 "missing" proteins: a bioinformatics approach.
    Ranganathan S; Khan JM; Garg G; Baker MS
    J Proteome Res; 2013 Jun; 12(6):2504-10. PubMed ID: 23308364
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Analysis of the resolution limitations of peptide identification algorithms.
    Colaert N; Degroeve S; Helsens K; Martens L
    J Proteome Res; 2011 Dec; 10(12):5555-61. PubMed ID: 21995378
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 39.