These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

420 related articles for article (PubMed ID: 26335531)

  • 1. Scientific workflow optimization for improved peptide and protein identification.
    Holl S; Mohammed Y; Zimmermann O; Palmblad M
    BMC Bioinformatics; 2015 Sep; 16(1):284. PubMed ID: 26335531
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.
    Mohammed Y; Domański D; Jackson AM; Smith DS; Deelder AM; Palmblad M; Borchers CH
    J Proteomics; 2014 Jun; 106():151-61. PubMed ID: 24769191
    [TBL] [Abstract][Full Text] [Related]  

  • 3. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.
    Malm EK; Srivastava V; Sundqvist G; Bulone V
    BMC Bioinformatics; 2014 Dec; 15(1):441. PubMed ID: 25547515
    [TBL] [Abstract][Full Text] [Related]  

  • 4. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
    J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Biowep: a workflow enactment portal for bioinformatics applications.
    Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L
    BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
    [TBL] [Abstract][Full Text] [Related]  

  • 6. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.
    Perez-Riverol Y; Uszkoreit J; Sanchez A; Ternent T; Del Toro N; Hermjakob H; Vizcaíno JA; Wang R
    Bioinformatics; 2015 Sep; 31(17):2903-5. PubMed ID: 25910694
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CoreFlow: a computational platform for integration, analysis and modeling of complex biological data.
    Pasculescu A; Schoof EM; Creixell P; Zheng Y; Olhovsky M; Tian R; So J; Vanderlaan RD; Pawson T; Linding R; Colwill K
    J Proteomics; 2014 Apr; 100():167-73. PubMed ID: 24503186
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.
    Muth T; Rapp E; Berven FS; Barsnes H; Vaudel M
    Adv Exp Med Biol; 2016; 919():217-226. PubMed ID: 27975219
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
    Garcia Castro A; Thoraval S; Garcia LJ; Ragan MA
    BMC Bioinformatics; 2005 Apr; 6():87. PubMed ID: 15813976
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Open mass spectrometry search algorithm.
    Geer LY; Markey SP; Kowalak JA; Wagner L; Xu M; Maynard DM; Yang X; Shi W; Bryant SH
    J Proteome Res; 2004; 3(5):958-64. PubMed ID: 15473683
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Scientific workflow management in proteomics.
    de Bruin JS; Deelder AM; Palmblad M
    Mol Cell Proteomics; 2012 Jul; 11(7):M111.010595. PubMed ID: 22411703
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
    Slysz GW; Baker CA; Bozsa BM; Dang A; Percy AJ; Bennett M; Schriemer DC
    BMC Bioinformatics; 2009 May; 10():162. PubMed ID: 19473537
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics.
    Tsou CC; Avtonomov D; Larsen B; Tucholska M; Choi H; Gingras AC; Nesvizhskii AI
    Nat Methods; 2015 Mar; 12(3):258-64, 7 p following 264. PubMed ID: 25599550
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Combination of Edman degradation of peptides with liquid chromatography/mass spectrometry workflow for peptide identification in bottom-up proteomics.
    Lobas AA; Verenchikov AN; Goloborodko AA; Levitsky LI; Gorshkov MV
    Rapid Commun Mass Spectrom; 2013 Feb; 27(3):391-400. PubMed ID: 23280970
    [TBL] [Abstract][Full Text] [Related]  

  • 16. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
    MacLean B; Eng JK; Beavis RC; McIntosh M
    Bioinformatics; 2006 Nov; 22(22):2830-2. PubMed ID: 16877754
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification.
    Cho JY; Lee HJ; Jeong SK; Paik YK
    J Proteome Res; 2017 Dec; 16(12):4435-4445. PubMed ID: 28299940
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Methods to Calculate Spectrum Similarity.
    Yilmaz Ş; Vandermarliere E; Martens L
    Methods Mol Biol; 2017; 1549():75-100. PubMed ID: 27975285
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PeaksPTM: Mass spectrometry-based identification of peptides with unspecified modifications.
    Han X; He L; Xin L; Shan B; Ma B
    J Proteome Res; 2011 Jul; 10(7):2930-6. PubMed ID: 21609001
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Visualization, Inspection and Interpretation of Shotgun Proteomics Identification Results.
    Lereim RR; Oveland E; Berven FS; Vaudel M; Barsnes H
    Adv Exp Med Biol; 2016; 919():227-235. PubMed ID: 27975220
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.