These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 26351667)

  • 1. Accelerating molecular simulations of proteins using Bayesian inference on weak information.
    Perez A; MacCallum JL; Dill KA
    Proc Natl Acad Sci U S A; 2015 Sep; 112(38):11846-51. PubMed ID: 26351667
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MELD × MD Folds Nonthreadables, Giving Native Structures and Populations.
    Robertson JC; Perez A; Dill KA
    J Chem Theory Comput; 2018 Dec; 14(12):6734-6740. PubMed ID: 30407805
    [TBL] [Abstract][Full Text] [Related]  

  • 3. When MELD Meets GaMD: Accelerating Biomolecular Landscape Exploration.
    Caparotta M; Perez A
    J Chem Theory Comput; 2023 Dec; 19(23):8743-8750. PubMed ID: 38039424
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accelerating Protein Folding Molecular Dynamics Using Inter-Residue Distances from Machine Learning Servers.
    Nassar R; Brini E; Parui S; Liu C; Dignon GL; Dill KA
    J Chem Theory Comput; 2022 Mar; 18(3):1929-1935. PubMed ID: 35133832
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accelerating physical simulations of proteins by leveraging external knowledge.
    Perez A; Morrone JA; Dill KA
    Wiley Interdiscip Rev Comput Mol Sci; 2017; 7(5):. PubMed ID: 28959358
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring the energy landscape of protein folding using replica-exchange and conventional molecular dynamics simulations.
    Beck DA; White GW; Daggett V
    J Struct Biol; 2007 Mar; 157(3):514-23. PubMed ID: 17113307
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Application of biasing-potential replica-exchange simulations for loop modeling and refinement of proteins in explicit solvent.
    Kannan S; Zacharias M
    Proteins; 2010 Oct; 78(13):2809-19. PubMed ID: 20635348
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small Proteins.
    Kato K; Nakayoshi T; Fukuyoshi S; Kurimoto E; Oda A
    Molecules; 2017 Oct; 22(10):. PubMed ID: 29023395
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Folding Thermodynamics and Mechanism of Five Trp-Cage Variants from Replica-Exchange MD Simulations with RSFF2 Force Field.
    Zhou CY; Jiang F; Wu YD
    J Chem Theory Comput; 2015 Nov; 11(11):5473-80. PubMed ID: 26574335
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Determining protein structures by combining semireliable data with atomistic physical models by Bayesian inference.
    MacCallum JL; Perez A; Dill KA
    Proc Natl Acad Sci U S A; 2015 Jun; 112(22):6985-90. PubMed ID: 26038552
    [TBL] [Abstract][Full Text] [Related]  

  • 11. HiRE-RNA: a high resolution coarse-grained energy model for RNA.
    Pasquali S; Derreumaux P
    J Phys Chem B; 2010 Sep; 114(37):11957-66. PubMed ID: 20795690
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Constraint methods that accelerate free-energy simulations of biomolecules.
    Perez A; MacCallum JL; Coutsias EA; Dill KA
    J Chem Phys; 2015 Dec; 143(24):243143. PubMed ID: 26723628
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multiscale investigation of chemical interference in proteins.
    Samiotakis A; Homouz D; Cheung MS
    J Chem Phys; 2010 May; 132(17):175101. PubMed ID: 20459186
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Folding mechanism of beta-hairpins studied by replica exchange molecular simulations.
    Zhang J; Qin M; Wang W
    Proteins; 2006 Mar; 62(3):672-85. PubMed ID: 16362933
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Coarse-grained protein model with residue orientation energies derived from atomic force fields.
    Betancourt MR
    J Phys Chem B; 2009 Nov; 113(44):14824-30. PubMed ID: 19817469
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent.
    Chebaro Y; Dong X; Laghaei R; Derreumaux P; Mousseau N
    J Phys Chem B; 2009 Jan; 113(1):267-74. PubMed ID: 19067549
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computing Ligands Bound to Proteins Using MELD-Accelerated MD.
    Liu C; Brini E; Perez A; Dill KA
    J Chem Theory Comput; 2020 Oct; 16(10):6377-6382. PubMed ID: 32910647
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Predicting peptide structures in native proteins from physical simulations of fragments.
    Voelz VA; Shell MS; Dill KA
    PLoS Comput Biol; 2009 Feb; 5(2):e1000281. PubMed ID: 19197352
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Microsecond scale replica exchange molecular dynamic simulation of villin headpiece: an insight into the folding landscape.
    Jani V; Sonavane UB; Joshi R
    J Biomol Struct Dyn; 2011 Jun; 28(6):845-60. PubMed ID: 21469746
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Coarse-grained simulations of RNA and DNA duplexes.
    Cragnolini T; Derreumaux P; Pasquali S
    J Phys Chem B; 2013 Jul; 117(27):8047-60. PubMed ID: 23730911
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.