These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
191 related articles for article (PubMed ID: 26353838)
21. An RNA folding method capable of identifying pseudoknots and base triples. Tabaska JE; Cary RB; Gabow HN; Stormo GD Bioinformatics; 1998; 14(8):691-9. PubMed ID: 9789095 [TBL] [Abstract][Full Text] [Related]
22. Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots. Hajdin CE; Bellaousov S; Huggins W; Leonard CW; Mathews DH; Weeks KM Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5498-503. PubMed ID: 23503844 [TBL] [Abstract][Full Text] [Related]
23. incaRNAfbinv: a web server for the fragment-based design of RNA sequences. Drory Retwitzer M; Reinharz V; Ponty Y; Waldispühl J; Barash D Nucleic Acids Res; 2016 Jul; 44(W1):W308-14. PubMed ID: 27185893 [TBL] [Abstract][Full Text] [Related]
24. A folding algorithm for extended RNA secondary structures. Höner zu Siederdissen C; Bernhart SH; Stadler PF; Hofacker IL Bioinformatics; 2011 Jul; 27(13):i129-36. PubMed ID: 21685061 [TBL] [Abstract][Full Text] [Related]
25. Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA. Lavender CA; Lorenz R; Zhang G; Tamayo R; Hofacker IL; Weeks KM PLoS Comput Biol; 2015 May; 11(5):e1004126. PubMed ID: 25992778 [TBL] [Abstract][Full Text] [Related]
28. RNA Secondary Structures with Limited Base Pair Span: Exact Backtracking and an Application. Lorenz R; Stadler PF Genes (Basel); 2020 Dec; 12(1):. PubMed ID: 33374382 [TBL] [Abstract][Full Text] [Related]
29. An extension of the graph theoretical approach to predict the secondary structure of large RNAs: the complex of 16S and 23S rRNAs from E. coli as a case study. Thanaraj TA; Kolaskar AS; Pandit MW Comput Appl Biosci; 1989 Jul; 5(3):211-8. PubMed ID: 2475225 [TBL] [Abstract][Full Text] [Related]
31. Integrating chemical footprinting data into RNA secondary structure prediction. Zarringhalam K; Meyer MM; Dotu I; Chuang JH; Clote P PLoS One; 2012; 7(10):e45160. PubMed ID: 23091593 [TBL] [Abstract][Full Text] [Related]
32. ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs. Otto C; Möhl M; Heyne S; Amit M; Landau GM; Backofen R; Will S BMC Bioinformatics; 2014 Dec; 15(1):404. PubMed ID: 25551362 [TBL] [Abstract][Full Text] [Related]
33. RNAfbinv: an interactive Java application for fragment-based design of RNA sequences. Weinbrand L; Avihoo A; Barash D Bioinformatics; 2013 Nov; 29(22):2938-40. PubMed ID: 23975763 [TBL] [Abstract][Full Text] [Related]
34. ERD: a fast and reliable tool for RNA design including constraints. Esmaili-Taheri A; Ganjtabesh M BMC Bioinformatics; 2015 Jan; 16():20. PubMed ID: 25626878 [TBL] [Abstract][Full Text] [Related]
35. Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data. Wu Y; Shi B; Ding X; Liu T; Hu X; Yip KY; Yang ZR; Mathews DH; Lu ZJ Nucleic Acids Res; 2015 Sep; 43(15):7247-59. PubMed ID: 26170232 [TBL] [Abstract][Full Text] [Related]
36. Rtools: a web server for various secondary structural analyses on single RNA sequences. Hamada M; Ono Y; Kiryu H; Sato K; Kato Y; Fukunaga T; Mori R; Asai K Nucleic Acids Res; 2016 Jul; 44(W1):W302-7. PubMed ID: 27131356 [TBL] [Abstract][Full Text] [Related]
37. Integration of accessibility data from structure probing into RNA-RNA interaction prediction. Miladi M; Montaseri S; Backofen R; Raden M Bioinformatics; 2019 Aug; 35(16):2862-2864. PubMed ID: 30590479 [TBL] [Abstract][Full Text] [Related]
38. RNA folding with hard and soft constraints. Lorenz R; Hofacker IL; Stadler PF Algorithms Mol Biol; 2016; 11():8. PubMed ID: 27110276 [TBL] [Abstract][Full Text] [Related]