These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 26357074)

  • 1. MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
    Daniels NM; Gallant A; Ramsey N; Cowen LJ
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(1):4-16. PubMed ID: 26357074
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.
    Daniels NM; Hosur R; Berger B; Cowen LJ
    Bioinformatics; 2012 May; 28(9):1216-22. PubMed ID: 22408192
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MRFalign: protein homology detection through alignment of Markov random fields.
    Ma J; Wang S; Wang Z; Xu J
    PLoS Comput Biol; 2014 Mar; 10(3):e1003500. PubMed ID: 24675572
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection.
    Damoulas T; Girolami MA
    Bioinformatics; 2008 May; 24(10):1264-70. PubMed ID: 18378524
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Designing patterns for profile HMM search.
    Sun Y; Buhler J
    Bioinformatics; 2007 Jan; 23(2):e36-43. PubMed ID: 17237102
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mismatch string kernels for discriminative protein classification.
    Leslie CS; Eskin E; Cohen A; Weston J; Noble WS
    Bioinformatics; 2004 Mar; 20(4):467-76. PubMed ID: 14990442
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.
    Kahsay RY; Wang G; Gao G; Liao L; Dunbrack R
    Bioinformatics; 2005 May; 21(10):2287-93. PubMed ID: 15797916
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Remote homology detection: a motif based approach.
    Ben-Hur A; Brutlag D
    Bioinformatics; 2003; 19 Suppl 1():i26-33. PubMed ID: 12855434
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CompariMotif: quick and easy comparisons of sequence motifs.
    Edwards RJ; Davey NE; Shields DC
    Bioinformatics; 2008 May; 24(10):1307-9. PubMed ID: 18375965
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High speed biological sequence analysis with hidden Markov models on reconfigurable platforms.
    Oliver TF; Schmidt B; Jakop Y; Maskell DL
    IEEE Trans Inf Technol Biomed; 2009 Sep; 13(5):740-6. PubMed ID: 19273034
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improving model construction of profile HMMs for remote homology detection through structural alignment.
    Bernardes JS; Dávila AM; Costa VS; Zaverucha G
    BMC Bioinformatics; 2007 Nov; 8():435. PubMed ID: 17999748
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Dynamics alignment: comparison of protein dynamics in the SCOP database.
    Tobi D
    Proteins; 2012 Apr; 80(4):1167-76. PubMed ID: 22275069
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The WWWH of remote homolog detection: the state of the art.
    Fariselli P; Rossi I; Capriotti E; Casadio R
    Brief Bioinform; 2007 Mar; 8(2):78-87. PubMed ID: 17003074
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A generalized affine gap model significantly improves protein sequence alignment accuracy.
    Zachariah MA; Crooks GE; Holbrook SR; Brenner SE
    Proteins; 2005 Feb; 58(2):329-38. PubMed ID: 15562515
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recognition of beta-structural motifs using hidden Markov models trained with simulated evolution.
    Kumar A; Cowen L
    Bioinformatics; 2010 Jun; 26(12):i287-93. PubMed ID: 20529918
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Remote homolog detection using local sequence-structure correlations.
    Hou Y; Hsu W; Lee ML; Bystroff C
    Proteins; 2004 Nov; 57(3):518-30. PubMed ID: 15382242
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Discriminative motif finding for predicting protein subcellular localization.
    Lin TH; Murphy RF; Bar-Joseph Z
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(2):441-51. PubMed ID: 21233524
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2010 Aug; 26(16):1958-64. PubMed ID: 20576627
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Augmented training of hidden Markov models to recognize remote homologs via simulated evolution.
    Kumar A; Cowen L
    Bioinformatics; 2009 Jul; 25(13):1602-8. PubMed ID: 19389731
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR; Oehmen CS; Webb-Robertson BJ
    Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.