250 related articles for article (PubMed ID: 26358618)
1. Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes.
Ockendon NF; O'Connell LA; Bush SJ; Monzón-Sandoval J; Barnes H; Székely T; Hofmann HA; Dorus S; Urrutia AO
Mol Ecol Resour; 2016 Mar; 16(2):446-58. PubMed ID: 26358618
[TBL] [Abstract][Full Text] [Related]
2. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
3. A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species.
Torres-Oliva M; Almudi I; McGregor AP; Posnien N
BMC Genomics; 2016 May; 17():392. PubMed ID: 27220689
[TBL] [Abstract][Full Text] [Related]
4. Comparison of Gene Expression Profiles in Nonmodel Eukaryotic Organisms with RNA-Seq.
Cheng H; Wang Y; Sun MA
Methods Mol Biol; 2018; 1751():3-16. PubMed ID: 29508286
[TBL] [Abstract][Full Text] [Related]
5. RNA-Seq in Nonmodel Organisms.
Chalifa-Caspi V
Methods Mol Biol; 2021; 2243():143-167. PubMed ID: 33606257
[TBL] [Abstract][Full Text] [Related]
6. Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout.
Salem M; Paneru B; Al-Tobasei R; Abdouni F; Thorgaard GH; Rexroad CE; Yao J
PLoS One; 2015; 10(3):e0121778. PubMed ID: 25793877
[TBL] [Abstract][Full Text] [Related]
7. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments.
Vijay N; Poelstra JW; Künstner A; Wolf JB
Mol Ecol; 2013 Feb; 22(3):620-34. PubMed ID: 22998089
[TBL] [Abstract][Full Text] [Related]
8. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
Strickler SR; Bombarely A; Mueller LA
Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
[TBL] [Abstract][Full Text] [Related]
9. 454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: transcriptome assembly and toxicant induced changes.
Hook SE; Twine NA; Simpson SL; Spadaro DA; Moncuquet P; Wilkins MR
Aquat Toxicol; 2014 Aug; 153():73-88. PubMed ID: 24434169
[TBL] [Abstract][Full Text] [Related]
10. De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.
Birol I; Behsaz B; Hammond SA; Kucuk E; Veldhoen N; Helbing CC
PLoS One; 2015; 10(6):e0130720. PubMed ID: 26121473
[TBL] [Abstract][Full Text] [Related]
11. AGOUTI: improving genome assembly and annotation using transcriptome data.
Zhang SV; Zhuo L; Hahn MW
Gigascience; 2016 Jul; 5(1):31. PubMed ID: 27435057
[TBL] [Abstract][Full Text] [Related]
12. De novo assembly and annotation of the marine mysid (Neomysis awatschensis) transcriptome.
Kim HS; Hwang DS; Lee BY; Park JC; Lee YH; Lee JS
Mar Genomics; 2016 Aug; 28():41-43. PubMed ID: 27189440
[TBL] [Abstract][Full Text] [Related]
13. Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.).
Puglia GD; Prjibelski AD; Vitale D; Bushmanova E; Schmid KJ; Raccuia SA
BMC Genomics; 2020 Aug; 21(1):317. PubMed ID: 32819282
[TBL] [Abstract][Full Text] [Related]
14. Enhancing Structural Annotation of Yeast Genomes with RNA-Seq Data.
Devillers H; Morin N; Neuvéglise C
Methods Mol Biol; 2016; 1361():41-56. PubMed ID: 26483014
[TBL] [Abstract][Full Text] [Related]
15. Multiple model species selection for transcriptomics analysis of non-model organisms.
Pai TW; Li KH; Yang CH; Hu CH; Lin HJ; Wang WD; Chen YR
BMC Bioinformatics; 2018 Aug; 19(Suppl 9):284. PubMed ID: 30367568
[TBL] [Abstract][Full Text] [Related]
16. Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).
Peng X; Thierry-Mieg J; Thierry-Mieg D; Nishida A; Pipes L; Bozinoski M; Thomas MJ; Kelly S; Weiss JM; Raveendran M; Muzny D; Gibbs RA; Rogers J; Schroth GP; Katze MG; Mason CE
Nucleic Acids Res; 2015 Jan; 43(Database issue):D737-42. PubMed ID: 25392405
[TBL] [Abstract][Full Text] [Related]
17. RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit.
Garcia-Seco D; Zhang Y; Gutierrez-Mañero FJ; Martin C; Ramos-Solano B
BMC Genomics; 2015 Jan; 16(1):5. PubMed ID: 25608670
[TBL] [Abstract][Full Text] [Related]
18. Diminishing returns in next-generation sequencing (NGS) transcriptome data.
Lei R; Ye K; Gu Z; Sun X
Gene; 2015 Feb; 557(1):82-7. PubMed ID: 25497830
[TBL] [Abstract][Full Text] [Related]
19. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome.
Ptitsyn A; Temanni R; Bouchard C; Anderson PA
PLoS One; 2015; 10(9):e0138006. PubMed ID: 26393794
[TBL] [Abstract][Full Text] [Related]
20. Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction.
Jung H; Yoon BH; Kim WJ; Kim DW; Hurwood DA; Lyons RE; Salin KR; Kim HS; Baek I; Chand V; Mather PB
Int J Mol Sci; 2016 May; 17(5):. PubMed ID: 27164098
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
