145 related articles for article (PubMed ID: 26363029)
1. An algorithm for automated layout of process description maps drawn in SBGN.
Genc B; Dogrusoz U
Bioinformatics; 2016 Jan; 32(1):77-84. PubMed ID: 26363029
[TBL] [Abstract][Full Text] [Related]
2. Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
Czauderna T; Wybrow M; Marriott K; Schreiber F
BMC Bioinformatics; 2013 Aug; 14():250. PubMed ID: 23953132
[TBL] [Abstract][Full Text] [Related]
3. sbgntikz-a TikZ library to draw SBGN maps.
Rougny A
Bioinformatics; 2019 Nov; 35(21):4499-4500. PubMed ID: 31070720
[TBL] [Abstract][Full Text] [Related]
4. fCoSE: A Fast Compound Graph Layout Algorithm with Constraint Support.
Balci H; Dogrusoz U
IEEE Trans Vis Comput Graph; 2022 Dec; 28(12):4582-4593. PubMed ID: 34232882
[TBL] [Abstract][Full Text] [Related]
5. SBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps.
Sari M; Bahceci I; Dogrusoz U; Sumer SO; Aksoy BA; Babur Ö; Demir E
PLoS One; 2015; 10(6):e0128985. PubMed ID: 26030594
[TBL] [Abstract][Full Text] [Related]
6. StonPy: a tool to parse and query collections of SBGN maps in a graph database.
Rougny A; Balaur I; Luna A; Mazein A
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36897014
[TBL] [Abstract][Full Text] [Related]
7. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.
Balaur I; Roy L; Mazein A; Karaca SG; Dogrusoz U; Barillot E; Zinovyev A
Bioinformatics; 2020 Apr; 36(8):2620-2622. PubMed ID: 31904823
[TBL] [Abstract][Full Text] [Related]
8. Translation of SBGN maps: Process Description to Activity Flow.
Vogt T; Czauderna T; Schreiber F
BMC Syst Biol; 2013 Oct; 7():115. PubMed ID: 24176088
[TBL] [Abstract][Full Text] [Related]
9. SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.
Balci H; Dogrusoz U; Ozgul YZ; Atayev P
PLoS Comput Biol; 2022 Nov; 18(11):e1010635. PubMed ID: 36374853
[TBL] [Abstract][Full Text] [Related]
10. Software support for SBGN maps: SBGN-ML and LibSBGN.
van Iersel MP; Villéger AC; Czauderna T; Boyd SE; Bergmann FT; Luna A; Demir E; Sorokin A; Dogrusoz U; Matsuoka Y; Funahashi A; Aladjem MI; Mi H; Moodie SL; Kitano H; Le Novère N; Schreiber F
Bioinformatics; 2012 Aug; 28(15):2016-21. PubMed ID: 22581176
[TBL] [Abstract][Full Text] [Related]
11. Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
Moodie S; Le Novère N; Demir E; Mi H; Villéger A
J Integr Bioinform; 2015 Sep; 12(2):263. PubMed ID: 26528561
[TBL] [Abstract][Full Text] [Related]
12. Editing, validating and translating of SBGN maps.
Czauderna T; Klukas C; Schreiber F
Bioinformatics; 2010 Sep; 26(18):2340-1. PubMed ID: 20628075
[TBL] [Abstract][Full Text] [Related]
13. Systems biology graphical notation markup language (SBGNML) version 0.3.
Bergmann FT; Czauderna T; Dogrusoz U; Rougny A; Dräger A; Touré V; Mazein A; Blinov ML; Luna A
J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32568733
[TBL] [Abstract][Full Text] [Related]
14. Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.
Junker A; Rohn H; Czauderna T; Klukas C; Hartmann A; Schreiber F
Nat Protoc; 2012 Mar; 7(3):579-93. PubMed ID: 22383037
[TBL] [Abstract][Full Text] [Related]
15. Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.
Mi H; Schreiber F; Moodie S; Czauderna T; Demir E; Haw R; Luna A; Le Novère N; Sorokin A; Villéger A
J Integr Bioinform; 2015 Sep; 12(2):265. PubMed ID: 26528563
[TBL] [Abstract][Full Text] [Related]
16. An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.
Kojima K; Nagasaki M; Miyano S
BMC Bioinformatics; 2010 Jun; 11():335. PubMed ID: 20565884
[TBL] [Abstract][Full Text] [Related]
17. Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
Sorokin A; Le Novère N; Luna A; Czauderna T; Demir E; Haw R; Mi H; Moodie S; Schreiber F; Villéger A
J Integr Bioinform; 2015 Sep; 12(2):264. PubMed ID: 26528562
[TBL] [Abstract][Full Text] [Related]
18. Automated inference of Boolean models from molecular interaction maps using CaSQ.
Aghamiri SS; Singh V; Naldi A; Helikar T; Soliman S; Niarakis A
Bioinformatics; 2020 Aug; 36(16):4473-4482. PubMed ID: 32403123
[TBL] [Abstract][Full Text] [Related]
19. Fast grid layout algorithm for biological networks with sweep calculation.
Kojima K; Nagasaki M; Miyano S
Bioinformatics; 2008 Jun; 24(12):1433-41. PubMed ID: 18424458
[TBL] [Abstract][Full Text] [Related]
20. Qualitative dynamics semantics for SBGN process description.
Rougny A; Froidevaux C; Calzone L; Paulevé L
BMC Syst Biol; 2016 Jun; 10(1):42. PubMed ID: 27306057
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
