These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 26381203)

  • 1. Quantitative proteogenomics of human pathogens using DIA-MS.
    Malmström L; Bakochi A; Svensson G; Kilsgård O; Lantz H; Petersson AC; Hauri S; Karlsson C; Malmström J
    J Proteomics; 2015 Nov; 129():98-107. PubMed ID: 26381203
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis.
    Sun J; Wang W; Hundertmark C; Zeng AP; Jahn D; Deckwer WD
    J Biotechnol; 2006 Jul; 124(3):486-95. PubMed ID: 16567015
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Iterative genome correction largely improves proteomic analysis of nonmodel organisms.
    Wu X; Xu L; Gu W; Xu Q; He QY; Sun X; Zhang G
    J Proteome Res; 2014 Jun; 13(6):2724-34. PubMed ID: 24809469
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A tool for integrating genetic and mass spectrometry-based peptide data: Proteogenomics Viewer: PV: A genome browser-like tool, which includes MS data visualization and peptide identification parameters.
    Kroll JE; da Silva VL; de Souza SJ; de Souza GA
    Bioessays; 2017 Jul; 39(7):. PubMed ID: 28582591
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.
    Gallien S; Perrodou E; Carapito C; Deshayes C; Reyrat JM; Van Dorsselaer A; Poch O; Schaeffer C; Lecompte O
    Genome Res; 2009 Jan; 19(1):128-35. PubMed ID: 18955433
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes.
    Karlsson C; Malmström L; Aebersold R; Malmström J
    Nat Commun; 2012; 3():1301. PubMed ID: 23250431
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Proteogenomics: Key Driver for Clinical Discovery and Personalized Medicine.
    Barbieri R; Guryev V; Brandsma CA; Suits F; Bischoff R; Horvatovich P
    Adv Exp Med Biol; 2016; 926():21-47. PubMed ID: 27686804
    [TBL] [Abstract][Full Text] [Related]  

  • 8. mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry.
    Teo G; Kim S; Tsou CC; Collins B; Gingras AC; Nesvizhskii AI; Choi H
    J Proteomics; 2015 Nov; 129():108-120. PubMed ID: 26381204
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis.
    Prakash A; Peterman S; Ahmad S; Sarracino D; Frewen B; Vogelsang M; Byram G; Krastins B; Vadali G; Lopez M
    J Proteome Res; 2014 Dec; 13(12):5415-30. PubMed ID: 25244318
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline.
    Mamie Lih TS; Choong WK; Chen YJ; Sung TY
    J Proteome Res; 2018 Sep; 17(9):2937-2952. PubMed ID: 30088773
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Arabidopsis proteome and the mass spectral assay library.
    Zhang H; Liu P; Guo T; Zhao H; Bensaddek D; Aebersold R; Xiong L
    Sci Data; 2019 Nov; 6(1):278. PubMed ID: 31757973
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A simple shotgun proteomics method for rapid bacterial identification.
    Tracz DM; McCorrister SJ; Chong PM; Lee DM; Corbett CR; Westmacott GR
    J Microbiol Methods; 2013 Jul; 94(1):54-7. PubMed ID: 23631909
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mass spectrometry-based proteomics combined with bioinformatic tools for bacterial classification.
    Dworzanski JP; Deshpande SV; Chen R; Jabbour RE; Snyder AP; Wick CH; Li L
    J Proteome Res; 2006 Jan; 5(1):76-87. PubMed ID: 16396497
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protocol for Proteome Analysis of Group A Streptococcus.
    Wilk L
    Methods Mol Biol; 2020; 2136():135-144. PubMed ID: 32430817
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comprehensive analysis of the Streptococcus pyogenes and human plasma protein interaction network.
    Sjöholm K; Karlsson C; Linder A; Malmström J
    Mol Biosyst; 2014 Jul; 10(7):1698-708. PubMed ID: 24525632
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SpectroGene: A Tool for Proteogenomic Annotations Using Top-Down Spectra.
    Kolmogorov M; Liu X; Pevzner PA
    J Proteome Res; 2016 Jan; 15(1):144-51. PubMed ID: 26629978
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.
    Gupta N; Tanner S; Jaitly N; Adkins JN; Lipton M; Edwards R; Romine M; Osterman A; Bafna V; Smith RD; Pevzner PA
    Genome Res; 2007 Sep; 17(9):1362-77. PubMed ID: 17690205
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evolution of diversity in epidemics revealed by analysis of the human bacterial pathogen group A Streptococcus.
    Carroll RK; Beres SB; Sitkiewicz I; Peterson L; Matsunami RK; Engler DA; Flores AR; Sumby P; Musser JM
    Epidemics; 2011 Sep; 3(3-4):159-70. PubMed ID: 22094339
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A simulation test bed for hypotheses of genome evolution.
    Beiko RG; Charlebois RL
    Bioinformatics; 2007 Apr; 23(7):825-31. PubMed ID: 17267425
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen.
    O'Toole PW; Snelling WJ; Canchaya C; Forde BM; Hardie KR; Josenhans C; Graham RLj; McMullan G; Parkhill J; Belda E; Bentley SD
    BMC Genomics; 2010 Mar; 11():164. PubMed ID: 20219135
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.